黄杆菌属

黄杆菌属（学名：Flavobacterium）为黄杆菌目黄杆菌科的一属好氧或兼性厌氧发酵型革兰氏阴性杆菌。直杆状，端圆。广泛分布在土壤和水中，在生肉、乳类和其他食物以及医院环境和人类的临床标本中都有检出。此属的模式种为水生黄杆菌(Flavobacterium aquatile)。

黄杆菌属
科学分类
域：	细菌域 Bacteria
门：	拟杆菌门 Bacteroidota
纲：	拟杆菌纲 Bacteroidia
目：	黄杆菌目 Flavobacteriales
科：	黄杆菌科 Flavobacteriaceae
属：	黄杆菌属 Flavobacterium Bergey et al，1923
模式种
水生黄杆菌 Flavobacterium aquatile (Frankland and Frankland 1889) Bergey et al. 1923
异名
Bacillus aquatilis Frankland and Frankland 1889

下属物种

本属包括以下物种：^[1]

• Flavobacterium acidificum Steinhaus 1941
• Flavobacterium aciduliphilum Kang et al. 2013
• Flavobacterium acidurans Millar 1973
• Flavobacterium aestivum Jo et al. 2023^[2]
• Flavobacterium aquiphilum Jo et al. 2023^[2]
• Flavobacterium ahnfeltiae Nedashkovskaya et al. 2015
• 栖阿卡亚黄杆菌 Flavobacterium akiainvivens Kuo et al. 2013
• Flavobacterium album Baek et al. 2018
• 居藻黄杆菌 Flavobacterium algicola Miyashita et al. 2010
• Flavobacterium algoritolerans Yin et al. 2023^[3]
• 碱土黄杆菌 Flavobacterium alkalisoli Xu et al. 2020^[4]
• Flavobacterium alvei Lee and Jeon 2018
• Flavobacterium amnicola Sheu et al. 2019
• Flavobacterium amnigenum Patil et al. 2019
• Flavobacterium amniphilum Sheu et al. 2017
• 安纳托利亚黄杆菌 Flavobacterium anatoliense Kacagan et al. 2013，异名
• 安徽黄杆菌 Flavobacterium anhuiense Liu et al. 2008
• 橙黄徽黄杆菌 Flavobacterium antarcticum Yi et al. 2005
• Flavobacterium aquariorum Joung et al. 2020
• Flavobacterium aquaticum Subhash et al. 2013
• 水生黄杆菌 Flavobacterium aquatile (Frankland and Frankland 1889) Bergey et al. 1923
• Flavobacterium aquicola Hatayama et al. 2016
• 硬水黄杆菌 Flavobacterium aquidurense Cousin et al. 2007
• Flavobacterium aquimarinum Kristyanto et al. 2018
• Flavobacterium araucananum Kämpfer et al. 2012
• Flavobacterium arcticum Li et al. 2017
• Flavobacterium ardleyense Zhou et al. 2017
• 芳香黄杆菌 Flavobacterium aromatium
• Flavobacterium arsenatis Ao et al. 2014
• Flavobacterium arsenitoxidans Khianngam et al. 2015
• Flavobacterium artemisiae Zhao et al. 2018
• Flavobacterium aurantiibacter Cai et al. 2018
• Flavobacterium autothermophilum Goto et al. 1978
• Flavobacterium azizsancarii Otur et al. 2023^[5]，以诺贝尔奖获得者阿齐兹·桑卡尔（Aziz Sancar）教授博士的名字命名
• Flavobacterium azooxidireducens Behrendt et al. 2023^[6]
• 大比目鱼黄杆菌 Flavobacterium balustinum Harrison 1929，异名
• Flavobacterium banpakuense Kim et al. 2011
• 北部湾黄杆菌 Flavobacterium beibuense Fu et al. 2011
• Flavobacterium bizetiae Mühle et al. 2021
• Flavobacterium bomense Liu et al. 2019，也拼作：Flavobacterium bomensis
• Flavobacterium branchiarum Zamora et al. 2016
• Flavobacterium branchiicola Zamora et al. 2016
• 嗜枝黄杆菌 Flavobacterium branchiophilum Wakabayashi et al. 1989，嗜鳍黄杆菌，也拼作Flavobacterium branchiophila
• 短黄杆菌 Flavobacterium breve (ex Lustig 1890) Holmes and Owen 1982，异名
• Flavobacterium brevivitae Chen et al. 2016
• 北京化工大学黄杆菌 Flavobacterium buctense Feng et al. 2016
• 淤泥黄杆菌 Flavobacterium caeni Liu et al. 2010
• Flavobacterium capsulatum Leifson 1962，为Novosphingobium capsulatum (Leifson 1962) Takeuchi et al. 2001的异名
• Flavobacterium caseinilyticum Chaudhary et al. 2020
• Flavobacterium cauense Qu et al. 2009
• Flavobacterium cellulosilyticum Chaudhary et al. 2020
• Flavobacterium cerinum Zhang et al. 2019
• 鲸黄杆菌 Flavobacterium ceti Vela et al. 2007，为Myroides ceti (Vela et al. 2007) García-López et al. 2020的异名
• Flavobacterium channae Kang et al. 2023^[7]
• 陈氏黄杆菌 Flavobacterium cheniae Qu et al. 2008，陈文新氏黄杆菌，以陈文新的名字命名
• Flavobacterium cheonanense Lee et al. 2012
• Flavobacterium cheongpyeongense Joung et al. 2019
• Flavobacterium cheonhonense Lee et al. 2014
• Flavobacterium chilense Kämpfer et al. 2012
• Flavobacterium chryseum Králová et al. 2018
• Flavobacterium chuncheonense Park et al. 2017
• Flavobacterium chungangense Kim et al. 2009
• Flavobacterium chungbukense Lim et al. 2011
• 忠南黄杆菌 Flavobacterium chungnamense Lee et al. 2012
• Flavobacterium circumlabens Králová et al. 2019
• Flavobacterium cloacae Liu et al. 2017，为Myroides cloacae (Liu et al. 2017) García-López et al. 2020的异名
• 柯林斯黄杆菌 Flavobacterium collinsense Zhang et al. 2016，指该菌种分离自南极柯林斯冰帽冰川
• Flavobacterium collinsii Zamora et al. 2016
• 柱状黄杆菌 Flavobacterium columnare (Bernardet and Grimont 1989) Bernardet et al. 1996
• Flavobacterium commune Ekwe and Kim 2018
• Flavobacterium compostarboris Kim et al. 2012
• Flavobacterium covae La Frentz et al. 2022^[8]，以已故Covadonga Rodriguez Arias博士的名字命名（别名“Cova”），以表彰她对柱状病的研究
• Flavobacterium crassostreae Choi et al. 2017
• Flavobacterium croceum Park et al. 2006
• Flavobacterium crocinum Baek et al. 2018
• 黄瓜黄杆菌 Flavobacterium cucumis Weon et al. 2007
• Flavobacterium cupreum Králová et al. 2019
• Flavobacterium cutihirudinis Glaeser et al. 2013
• Flavobacterium cyanobacteriorum Cai et al. 2018
• Flavobacterium cyclinae Kang et al. 2023^[7]
• 大田黄杆菌 Flavobacterium daejeonense Kim et al. 2006
• Flavobacterium daemonense Ngo et al. 2015，也拼作：Flavobacterium daemonensis
• 檀国黄杆菌 Flavobacterium dankookense Lee et al. 2012，种名指韩国檀国大学（Dankook University）
• Flavobacterium dasani Chaudhary et al. 2020
• 污水黄杆菌 Flavobacterium defluvii Park et al. 2007
• 哲拉什黄杆菌 Flavobacterium degerlachei Van Trappen et al. 2004，迪吉氏黄杆菌
• 脱氮黄杆菌 Flavobacterium denitrificans Horn et al. 2005
• Flavobacterium devorans (Zimmermann 1890) Bergey et al. 1923，异名
• Flavobacterium dispersum Chen et al. 2017
• 东滩黄杆菌 Flavobacterium dongtanense Xiao et al. 2011
• Flavobacterium eburneipallidum Jo et al. 2023^[2]
• Flavobacterium eburneum Hwang et al. 2017
• Flavobacterium edaphi Chhetri et al. 2019
• Flavobacterium effusum Chen et al. 2018
• Flavobacterium endophyticum Gao et al. 2015
• 恩施黄杆菌 Flavobacterium enshiense Dong et al. 2013
• Flavobacterium esteraromaticum (Omelianski 1923) Bergey et al. 1930，为Microbacterium esteraromaticum (Omelianski 1923) Takeuchi and Hatano 1998的异名
• 粪黄杆菌 Flavobacterium faecale Kim et al. 2014
• 酵米面黄杆菌 Flavobacterium farinofer-mentans
• Flavobacterium ferrugineum Sickles and Shaw 1934，异名
• 线形黄杆菌 Flavobacterium filum Ryu et al. 2007
• Flavobacterium flaviflagrans Dahal et al. 2017
• Flavobacterium flavigenum Jo et al. 2023^[2]
• Flavobacterium frigoritolerans Yang et al. 2023^[9]
• Flavobacterium flevense (van der Meulen et al. 1974) Bernardet et al. 1996
• Flavobacterium fluminis Ahn et al. 2017
• Flavobacterium fluviale Baek et al. 2020
• Flavobacterium fluviatile Chen et al. 2018
• Flavobacterium fluvii Lee et al. 2010
• Flavobacterium foetidum Bu and Cha 2018
• Flavobacterium fontis Chun et al. 2013
• 弱黄杆菌 Flavobacterium fragile Ran et al. 2024^[10]
• 冷水黄杆菌 Flavobacterium frigidarium Humphry et al. 2001，寒冷黄杆菌^[11]
• 冷海水黄杆菌 Flavobacterium frigidimaris Nogi et al. 2005
• 冷域黄杆菌 Flavobacterium frigoris Van Trappen et al. 2004^[12]
• 弗里克塞尔湖黄杆菌 Flavobacterium fryxellicola Van Trappen et al. 2005
• Flavobacterium fulvum Nguyen and Kim 2016
• Flavobacterium gelatinilyticum Jo et al. 2023^[2]
• 冰湖黄杆菌 Flavobacterium gelidilacus Van Trappen et al. 2003
• Flavobacterium gillisiae McCammon and Bowman 2000
• Flavobacterium gilvum Shin et al. 2017
• 人参土黄杆菌 Flavobacterium ginsengisoli Kim et al. 2013
• 转化人参皂苷黄杆菌 Flavobacterium ginsenosidimutans Yang et al. 2011
• 冰川黄杆菌 Flavobacterium glaciei Zhang et al. 2006
• 粘黄杆菌 Flavobacterium gleum Holmes et al. 1984，异名
• 大豆黄杆菌 Flavobacterium glycines Madhaiyan et al. 2010
• Flavobacterium gondwanense Dobson et al. 1993，异名
• Flavobacterium gossypii Kämpfer et al. 2017
• 细粒黄杆菌 Flavobacterium granuli Aslam et al. 2005
• Flavobacterium gyeonganense Kim et al. 2014
• Flavobacterium halmophilum Elazari-Volcani 1940，也拼作Flavobacterium halmephilium
• Flavobacterium hankyongi Liu et al. 2018
• 简浩然氏黄杆菌 Flavobacterium haoranii Zhang et al. 2010
• 华农黄杆菌 Flavobacterium hauense Dong et al. 2013，华农产黄细菌，种名指华中农业大学（HUA）
• 肝素黄杆菌 Flavobacterium heparinum Payza and Korn 1956，异名
• 哈茨山黄杆菌 Flavobacterium hercynium Cousin et al. 2007
• 冬天黄杆菌 Flavobacterium hibernum McCammon et al. 1998
• Flavobacterium hibisci Moya et al. 2017
• Flavobacterium hiemivividum Chaudhary et al. 2020
• Flavobacterium humicola Nguyen and Kim 2016
• 湿土黄杆菌 Flavobacterium humidisoli Ra et al. 2023^[13]
• 匈牙利黄杆菌 Flavobacterium hungaricum Máté et al. 2023^[14]
• 水生黄杆菌 Flavobacterium hydatis Bernardet et al. 1996
• Flavobacterium hydrophilum Joung et al. 2019
• Flavobacterium ichthyis Chen et al. 2020
• 印度黄杆菌 Flavobacterium indicum Saha and Chakrabarti, 2006
• 产吲哚黄杆菌 Flavobacterium indologenes Yabuuchi et al. 1983，产吲哚金黄杆菌
• Flavobacterium indoltheticum Campbell and Williams, 1951
• Flavobacterium inkyongense Park et al. 2017
• 济州黄杆菌 Flavobacterium jejuense Park et al. 2016，也拼作：Flavobacterium jejuensis
• 约氏黄杆菌 Flavobacterium johnsoniae (Stanier 1947) Bernardet et al. 1996，约翰逊黄杆菌，也拼作：Flavobacterium johnsonae
• Flavobacterium jumunjinense Joung et al. 2013
• Flavobacterium keumense Ekwe et al. 2017
• Flavobacterium kingsejongi Choi et al. 2018
• Flavobacterium knui Kim et al. 2019
• 朝鲜黄杆菌 Flavobacterium koreense Lee et al. 2012
• Flavobacterium kyungheense Son et al. 2014，也拼作：Flavobacterium kyungheensis
• Flavobacterium lacicola Park et al. 2018
• Flavobacterium lacisediminis Zhang et al. 2023^[15]
• Flavobacterium lacunae Chen et al. 2017
• 湖黄杆菌 Flavobacterium lacus Li et al. 2014
• Flavobacterium lacustre Jo et al. 2023^[2]
• Flavobacterium laiguense Yang et al. 2019
• Flavobacterium limi Moya et al. 2017
• 栖污泥黄杆菌 Flavobacterium limicola Tamaki et al. 2003
• Flavobacterium limnophilum Jo et al. 2023^[2]
• Flavobacterium limnosediminis Lee et al. 2013
• 耐林丹黄杆菌 Flavobacterium lindanitolerans Jit et al. 2008
• 滨海黄杆菌 Flavobacterium litorale Muhammad et al. 2022^[16]
• 亮黄杆菌 Flavobacterium luminosum Ran et al. 2024^[10]
• Flavobacterium longum Fujii et al. 2014
• Flavobacterium luteolum Jo et al. 2023^[2]
• Flavobacterium luteum Park et al. 2017
• 解污泥黄杆菌 Flavobacterium luticocti Liu et al. 2017
• 活性污泥黄杆菌 Flavobacterium lutivivi Feng et al. 2016
• Flavobacterium macacae Li et al. 2020
• Flavobacterium macrobrachii Sheu et al. 2011
• Flavobacterium magnum Baek et al. 2018
• 茅台黄杆菌 Flavobacterium maotaiense Feng et al. 2015
• Flavobacterium marginilacus Jo et al. 2023^[2]
• Flavobacterium marinotypicum ZoBell and Upham 1944，为Microbacterium maritypicum (ZoBell and Upham 1944) Takeuchi and Hatano 1998的异名
• 海黄杆菌 Flavobacterium marinum Song et al. 2013，为Myroides aquimaris García-López et al. 2020的异名
• Flavobacterium maris Romanenko et al. 2016
• 脑膜炎黄杆菌 Flavobacterium meningosepticum King 1959，异名
• Flavobacterium microcysteis Seo et al. 2020
• 密克罗黄杆菌 Flavobacterium micromati Van Trappen et al. 2004
• 噬果胶黄杆菌 Flavobacterium mizutaii (Yabuuchi et al. 1983) Holmes et al. 1988，异名，也称水氏黄杆菌、水生黄杆菌
• Flavobacterium multivorum Holmes et al. 1981，为Sphingobacterium multivorum (Holmes et al. 1981) Yabuuchi et al. 1983的异名
• Flavobacterium myungsuense Joung et al. 2012
• Flavobacterium nackdongense Kim and Yu 2020
• Flavobacterium naphthae Chaudhary and Kim 2018
• Flavobacterium nitratireducens Nupur et al. 2013
• Flavobacterium nitrogenifigens Kämpfer et al. 2015
• Flavobacterium niveum Chen et al. 2019
• 难沉黄杆菌 Flavobacterium noncentrifugens Zhu et al. 2013，不聚中黄杆菌
• 三七黄杆菌 Flavobacterium notoginsengisoli Zhang et al. 2016
• 海泥黄杆菌 Flavobacterium oceanosedimentum Carty and Litchfield 1978
• 气味黄杆菌 Flavobacterium odoratum Stutzer 1929，为Flavobacterium Bergey et al. 1923的异名，也称芳香黄杆菌
• 芳香黄杆菌 Flavobacterium odoriferum Ran et al. 2024^[10]
• Flavobacterium okayamense Kitahara et al. 2023^[17]
• Flavobacterium okeanokoites ZoBell and Upham 1944，为Planococcus okeanokoites (ZoBell and Upham 1944) Nakagawa et al. 1996的异名
• Flavobacterium olei Chaudhary and Kim 2017
• 广食黄杆菌 Flavobacterium omnivorum Zhu et al. 2003
• Flavobacterium oncorhynchi Zamora et al. 2012
• 东方黄杆菌 Flavobacterium orientale Li et al. 2017
• 稻黄杆菌 Flavobacterium oryzae Chen et al. 2014
• Flavobacterium ovatum Ren et al. 2018
• Flavobacterium pallidum Baek et al. 2018
• 沼泽黄杆菌 Flavobacterium palustre Feng et al. 2015
• Flavobacterium panacagri Kim et al. 2023^[18]
• Flavobacterium panici Kämpfer et al. 2020
• Flavobacterium paronense Joung et al. 2016
• 噬果胶黄杆菌 Flavobacterium pectinovorum (Reichenbach 1989) Bernardet et al. 1996
• Flavobacterium pedocola Nguyen and Kim 2016
• Flavobacterium phocarum Zhou et al. 2018
• 芦苇黄杆菌 Flavobacterium phragmitis Liu et al. 2011
• Flavobacterium piscinae Chen et al. 2019
• 双鱼黄杆菌 Flavobacterium piscis Zamora et al. 2014
• Flavobacterium plurextorum Zamora et al. 2014
• 海黄杆菌 Flavobacterium ponti Yoon et al. 2011，海洋黄杆菌
• Flavobacterium potami Li et al. 2023^[19]
• 鄱阳黄杆菌 Flavobacterium poyangense Li et al. 2024^[20]
• Flavobacterium praedii Jo et al. 2023^[2]
• 长黄杆菌 Flavobacterium procerum Feng et al. 2015
• 深海黄杆菌 Flavobacterium profundi Wang et al. 2020
• 嗜冷水生黄杆菌 Flavobacterium psychraquaticum Avendaño-Herrera et al. 2024^[21]
• 冷湖黄杆菌 Flavobacterium psychrolimnae Van Trappen et al. 2005
• Flavobacterium psychrophilum (Bernardet and Grimont 1989) Bernardet et al. 1996
• Flavobacterium psychroterrae Králová et al. 2018
• Flavobacterium psychrotrophum Kim et al. 2023^[18]
• Flavobacterium psychrotolerans Yang et al. 2020
• Flavobacterium pygoscelis Irgang et al. 2023^[22]
• 羌塘黄杆菌 Flavobacterium qiangtangense Huang et al. 2015，也拼作：Flavobacterium qiangtangensis
• Flavobacterium quisquiliarum Zhang et al. 2017
• Flavobacterium rakeshii Kaur et al. 2012
• 然乌黄杆菌 Flavobacterium ranwuense Zhang et al. 2019
• 雷氏黄杆菌 Flavobacterium reichenbachii Ali et al. 2009，赖欣巴哈氏黄杆菌
• Flavobacterium resinovorum Delaporte and Daste 1956，为Novosphingobium resinovorum (Delaporte and Daste 1956) Lim et al. 2007的异名
• 耐抗黄杆菌 Flavobacterium resistens Ryu et al. 2008
• Flavobacterium restrictum Zhang et al. 2020
• Flavobacterium rhamnosiphilum Zhang et al. 2020
• Flavobacterium riviphilum Sheu et al. 2018
• 小河黄杆菌 Flavobacterium rivuli Ali et al. 2009
• 嗜糖黄杆菌 Flavobacterium saccharophilum (Reichenbach 1989) Bernardet et al. 1996
• Flavobacterium salegens Dobson et al. 1993，为Salegentibacter salegens (Dobson et al. 1993) McCammon and Bowman 2000的异名
• 盐湖黄杆菌 Flavobacterium salilacus Debnath et al. 2020
  • 盐湖黄杆菌高地亚种 Flavobacterium salilacus altitudinum
• 盐帽黄杆菌 Flavobacterium saliperosum Wang et al. 2006
• Flavobacterium salmonis Kämpfer et al. 2020
• Flavobacterium sandaracinum Chaudhary et al. 2020
• 沙上黄杆菌 Flavobacterium sasangense Yoon et al. 2009
• Flavobacterium scophthalmum Mudarris et al. 1994，为Chryseobacterium scophthalmum (Mudarris et al. 1994) Vandamme et al. 1994的异名
• 居沉积物黄杆菌 Flavobacterium sedimenticola Wu et al. 2023^[23][24]
• 海滨沉积物黄杆菌 Flavobacterium sediminilitoris Park et al. 2018
• 沉积物黄杆菌 Flavobacterium sediminis Bae et al. 2018
• 泥土黄杆菌 Flavobacterium segetis Yi et Chun, 2006
• 首尔黄杆菌 Flavobacterium seoulense Shin et al. 2015
• Flavobacterium sharifuzzamanii Debnath et al. 2019
• 施氏黄杆菌 Flavobacterium shii Yang et al. 2023，以地理学家和冰川学家、中国冰川学创始人施雅风教授的名字命名
• Flavobacterium silvisoli Chaudhary et al. 2019
• 中华耐冷黄杆菌 Flavobacterium sinopsychrotolerans Xu et al. 2011
• 土壤黄杆菌 Flavobacterium soli Yoon et al. 2006
• 大豆黄杆菌 Flavobacterium soyae Zhao et al. 2022^[25]
• 昭阳湖黄杆菌 Flavobacterium soyangense Nam et al. 2017
• Flavobacterium spartansii Loch and Faisal 2014
• Flavobacterium spiritivorum Holmes et al. 1982，为Sphingobacterium spiritivorum (Holmes et al. 1982) Yabuuchi et al. 1983的异名
• Flavobacterium squillarum Sheu et al. 2013
• Flavobacterium stagni Chen et al. 2019
• 碱蓬黄杆菌 Flavobacterium suaedae Sun et al. 2016
• 下萨克森州黄杆菌 Flavobacterium subsaxonicum Ali et al. 2009
• 琥珀酸黄杆菌 Flavobacterium succinicans (Reichenbach 1989) Bernardet et al. 1996，琥珀黄杆菌
• Flavobacterium sufflavum Chen et al. 2019
• 顺天黄杆菌 Flavobacterium suncheonense Kim et al. 2006
• Flavobacterium supellecticarium Lin et al. 2020
• 苏州黄杆菌 Flavobacterium suzhouense Zhang et al. 2015
• Flavobacterium swingsii Ali et al. 2009，以比利时著名微生物学家、世界文化收藏联合会前主席Jean Swings的名字命名
• 太湖黄杆菌 Flavobacterium taihuense Yang et al. 2022^[26]
• Flavobacterium tangerina Li et al. 2020
• Flavobacterium tangerinum Li et al. 2020
• 栖菌垫黄杆菌 Flavobacterium tegetincola McCammon and Bowman 2000
• Flavobacterium terrae Weon et al. 2007
• Flavobacterium terrigena Yoon et al. 2007
• Flavobacterium terriphilum Zhang et al. 2016
• Flavobacterium thalpophilum Holmes et al. 1983
• 热黄杆菌 Flavobacterium thermophilum Loginova and Egorova 1982
• 天格尔黄杆菌 Flavobacterium tiangeerense Xin et al. 2009
• 西藏黄杆菌 Flavobacterium tibetense Phurbu et al. 2019
• Flavobacterium tilapiae Chen et al. 2013
• Flavobacterium tistrianum Suwannachart et al. 2016
• Flavobacterium tructae Zamora et al. 2014
• Flavobacterium tyrosinilyticum Du and Yi 2016
• Flavobacterium uliginosum ZoBell and Upham 1944，为Zobellia uliginosa (ZoBell and Upham 1944) Barbeyron et al. 2001的异名
• Flavobacterium ummariense Lata et al. 2012
• Flavobacterium ureilyticum Dahal and Kim 2019
• Flavobacterium urocaniciphilum Fujii et al. 2014
• 乌鲁木齐黄杆菌 Flavobacterium urumqiense Dong et al. 2012
• Flavobacterium ustbae Liu et al. 2019
• Flavobacterium verecundum Sheu et al. 2016
• Flavobacterium vireti Singh et al. 2015
• Flavobacterium viscosum Li et al. 2020，也拼作：Flavobacterium viscosus
• 威弗半岛黄杆菌 Flavobacterium weaverense Yi and Chun 2006
• 黄色黄杆菌 Flavobacterium xanthum (ex Inoue and Komagata 1976) McCammon and Bowman 2000
• 新疆黄杆菌 Flavobacterium xinjiangense Zhu et al. 2003
• 雪山黄杆菌 Flavobacterium xueshanense Dong et al. 2012
• 薮内氏黄杆菌 Flavobacterium yabuuchiae Holmes et al. 1988，为Sphingobacterium spiritivorum (Holmes et al. 1982) Yabuuchi et al. 1983的异名
• Flavobacterium yafengii Yin et al. 2023^[3]
• 盐城黄杆菌 Flavobacterium yanchengense Hu et al. 2013
• 龙仁黄杆菌 Flavobacterium yonginense Joung et al. 2012
• Flavobacterium zepuense Zhang et al. 2020^[27]
• 摘箬山黄杆菌 Flavobacterium zhairuonense Debnath et al. 2020，也拼作Flavobacterium zhairuonensis