黄杆菌科

黄杆菌科（学名：Flavobacteriaceae）为黄杆菌目的一科细菌。此科的模式属为黄杆菌属(Flavobacterium)。黄杆菌科为环境细菌。^[1][2] 大多数菌种是需氧的，而有些是微需氧甚至是厌氧的；例如二氧化碳嗜纤维菌属（Capnocytophaga）和考诺尼亚菌属（Coenonia）。^[3]

黄杆菌科
科学分类
域：	细菌域 Bacteria
门：	擬桿菌門 Bacteroidota
纲：	擬桿菌綱 Bacteroidia
目：	黄杆菌目 Flavobacteriales
科：	黄杆菌科 Flavobacteriaceae Reichenbach 1992
模式属
黄杆菌属 Flavobacterium Bergey et al. 1923
異名
Sphingomonadaceae Kosako et al. 2000

下级分类

本科包括以下属：^[4]

• Abyssalbus Xu et al. 2022
  • Abyssalbus ytuae Xu et al. 2022^[5]
• Actibacter Kim et al. 2008
• Aegicerativicinus Huang et al. 2022
  • Aegicerativicinus sediminis Huang et al. 2022^[6]
• Aequorivita Bowman and Nichols 2002
  • Aequorivita aestuarii (Kim et al., 2010) Hahnke et al., 2017
  • Aequorivita antarctica Bowman & Nichols, 2002
  • Aequorivita aquimaris (Thevarajoo et al. 2016) García-López et al. 2020
  • Aequorivita capsosiphonis Park et al., 2009
  • Aequorivita crocea Bowman & Nichols, 2002
  • Aequorivita echinoideorum (Lin et al., 2015) Hahnke et al., 2017
  • Aequorivita lipolytica Bowman & Nichols, 2002
  • Aequorivita marisscotiae Liu et al. 2023^[7]
  • Aequorivita nionensis (Rajasabapathy et al., 2015) Hahnke et al., 2017
  • Aequorivita sinensis Wang et al. 2020^[8]
  • Aequorivita soesokkakensis (Park et al., 2014) Hahnke et al., 2017
  • Aequorivita sublithincola Bowman & Nichols, 2002
  • Aequorivita viscosa Liu et al., 2013
  • Aequorivita vitellina Wang et al. 2023^[9]
  • Aequorivita vladivostokensis (Nedashkovskaya et al., 2003) Hahnke et al., 2017
  • Aequorivita xiaoshiensis Wang et al. 2023^[9]
• 潮汐杆菌属 Aestuariibaculum Jeong et al. 2013
• Aestuariicola Yoon et al. 2008，为Lutimonas Yang et al. 2007的异名
• Aestuariimonas Park et al. 2018
  • Aestuariimonas insulae Park et al. 2018
• Aestuariivivens Park et al. 2015
  • Aestuariivivens insulae Park et al. 2015
  • Aestuariivivens marinum Huang et al. 2023^[10]
  • Aestuariivivens sediminicola Huang et al. 2023^[10]
  • Aestuariivivens sediminis Huang et al. 2023^[10]
• 海藻杆菌属 Algibacter Nedashkovskaya et al. 2004
• Algitalea Yoon et al. 2015
  • Algitalea ulvae Yoon et al. 2015
• Allomuricauda Deshmukh and Oren 2023^[11]
  • Allomuricauda abyssi (Wang et al. 2022) Deshmukh and Oren 2023
  • Allomuricauda aequoris (Guo et al. 2020) Deshmukh and Oren 2023
  • Allomuricauda algicola (Kim et al. 2020) Deshmukh and Oren 2023
  • Allomuricauda alvinocaridis (Liu et al. 2020) Deshmukh and Oren 2023
  • Allomuricauda amoyensis (Li et al. 2019) Deshmukh and Oren 2023
  • Allomuricauda amphidinii (Chen et al. 2021) Deshmukh and Oren 2023
  • Allomuricauda antarctica (Wu et al. 2013) Deshmukh and Oren 2023
  • Allomuricauda aquimarina (Yoon et al. 2005) Deshmukh and Oren 2023
  • Allomuricauda aurantiaca (Liang et al. 2021) Deshmukh and Oren 2023
  • Allomuricauda aurea (Zhao et al. 2022) Deshmukh and Oren 2023
  • Allomuricauda beolgyonensis (Lee et al. 2012) Deshmukh and Oren 2023
  • Allomuricauda chongwuensis (Chen et al. 2022) Deshmukh and Oren 2023
  • Allomuricauda eckloniae (Bae et al. 2007) Deshmukh and Oren 2023
  • Allomuricauda flava (Yoon and Oh 2012) Deshmukh and Oren 2023
  • Allomuricauda flavescens (Yoon et al. 2005) Deshmukh and Oren 2023
  • Allomuricauda hadalis (Zhang et al. 2020) Deshmukh and Oren 2023
  • Allomuricauda hymeniacidonis (Park 2019) Deshmukh and Oren 2023
  • Allomuricauda indica (Zhang et al. 2018) Deshmukh and Oren 2023
  • Allomuricauda iocasae (Liu et al. 2018) Deshmukh and Oren 2023
  • Allomuricauda koreensis (García-López et al. 2020) Deshmukh and Oren 2023
  • Allomuricauda lutaonensis (Arun et al. 2009) Deshmukh and Oren 2023
  • Allomuricauda lutea (Wang et al. 2017) Deshmukh and Oren 2023
  • Allomuricauda lutimaris (Yoon et al. 2008) Deshmukh and Oren 2023
  • Allomuricauda marina (Su et al. 2017) Deshmukh and Oren 2023
  • Allomuricauda maritima (Guo et al. 2020) Deshmukh and Oren 2023
  • Allomuricauda nanhaiensis (Dang et al. 2019) Deshmukh and Oren 2023
  • Allomuricauda oceanensis (Guo et al. 2020) Deshmukh and Oren 2023
  • Allomuricauda oceani (Dong et al. 2020) Deshmukh and Oren 2023
  • Allomuricauda ochracea (Kim et al. 2020) Deshmukh and Oren 2023
  • Allomuricauda olearia (Hwang et al. 2009) Deshmukh and Oren 2023
  • Allomuricauda onchidii (Liang et al. 2021) Deshmukh and Oren 2023
  • Allomuricauda pacifica (Zhang et al. 2015) Deshmukh and Oren 2023
  • Allomuricauda parva (Liang et al. 2021) Deshmukh and Oren 2023
  • Allomuricauda profundi (Zhao et al. 2022) Deshmukh and Oren 2023
  • Allomuricauda ruestringensis (Bruns et al. 2001) Deshmukh and Oren 2023
  • Allomuricauda sediminis (Zhu et al. 2021) Deshmukh and Oren 2023
  • Allomuricauda spongiicola (Shin and Park 2023) Deshmukh and Oren 2023
  • Allomuricauda taeanensis (Kim et al. 2013) Deshmukh and Oren 2023
  • Allomuricauda zhangzhouensis (Yang et al. 2013) Deshmukh and Oren 2023
• Amniculibacterium Chen et al. 2020
  • Amniculibacterium aquaticum Chen et al. 2020
• Antarcticibacterium Li et al. 2018
  • Antarcticibacterium arcticum Lee et al. 2020
  • Antarcticibacterium flavum Li et al. 2018
• Antarcticimonas Yang et al. 2014
  • Antarcticimonas flava Yang et al. 2014
• Aquaticitalea Xamxidin et al. 2016
• Aquibacter Hameed et al. 2014
• 海水杆菌属 Aquimarina Nedashkovskaya et al. 2005
• Arcticiflavibacter Liu et al. 2016
• 栖砂杆菌属 Arenibacter Ivanova et al. 2001
• Arenitalea Zhang et al. 2013
• Ascidiimonas Yoon et al. 2016
• Aurantiacicella Teramoto et al. 2016
• Aurantibacter García-López et al. 2020
• Aurantivirga Song et al. 2015
• Aureibaculum Zhao et al. 2021
• Aureicoccus Park et al. 2013
• Aureisphaera Yoon et al. 2015
• Aureitalea Park et al. 2012
• Aureivirga Haber et al. 2013
• 比兹奥氏菌属 Bizionia Nedashkovskaya et al. 2005
• 二氧化碳嗜纤维菌属 Capnocytophaga Leadbetter et al. 1982
• Cellulophaga Johansen et al. 1999
• 长城站菌属 Changchengzhania Wang et al. 2017
  • Changchengzhania lutea Wang et al. 2017^[12]
• 克里斯蒂安菌属 Christiangramia Deshmukh and Oren 2023
• Citreitalea Yoon et al. 2014，柠檬色杆菌属
  • Citreitalea marina Yoon et al. 2014
• 考诺尼亚菌属 Coenonia Vandamme et al. 1999
• Confluentibacter Park et al. 2016
  • Confluentibacter citreus Han et al. 2017
  • Confluentibacter flavum Li et al. 2018
  • Confluentibacter lentus Park et al. 2016
  • Confluentibacter sediminis Wei et al. 2019
• Constantimarinum Yang et al. 2023
  • Constantimarinum furrinae Yang et al. 2023^[13]
• Corallibacter Kim et al. 2012
  • Corallibacter vietnamensis Kim et al. 2012
• Costertonia Kwon et al. 2006
• Croceibacter Cho and Giovannoni 2003
• 藏红花色纤细杆菌属 Croceitalea Lee et al. 2008
• 橘黄色杆菌属 Croceivirga Hu et al. 2017
• Daejeonia Siddiqi et al. 2017
• 独岛菌属 Dokdonia Yoon et al. 2005
• 东海菌属 Donghaeana Yoon et al. 2006，为Nonlabens Lau et al. 2005的异名
• Eudoraea Alain et al. 2008
• Euzebyella Lucena et al. 2010
  • Euzebyella algicola Kwon et al. 2018
  • Euzebyella marina Zhang et al. 2017
  • Euzebyella saccharophila Lucena et al. 2010
• Faecalibacter Chen et al. 2020
  • Faecalibacter bovis Li et al. 2021
  • Faecalibacter macacae Chen et al. 2020
  • Faecalibacter rhinopitheci Wang et al. 2021
• 鞭毛单胞菌属 Flagellimonas Bae et al. 2007
• 黄胞菌属 Flavicella Teramoto and Nishijima, 2015
• Flavihalobacter Yin et al. 2021，为Psychroserpens Bowman et al. 1997的异名
• Flavimarina Nedashkovskaya et al., 2015
• Flaviramulus Einen and Øvreås, 2006
  • Flaviramulus aestuariivivens Park et al. 2017
  • Flaviramulus aquimarinus Lee et al. 2015
  • Flaviramulus basaltis Einen and Øvreås 2006
  • Flaviramulus ichthyoenteri Zhang et al. 2013
  • Flaviramulus multivorans (Park et al. 2014) Liu et al. 2023^[14]
• Flavirhabdus Shakeela et al. 2015
• 黄颜色杆菌属 Flavivirga Yi et al. 2012
• 黄杆菌属 Flavobacterium Bergey et al. 1923
• 华美菌属 Formosa Ivanova et al. 2004
• Frondibacter Yoon et al. 2015
• Fulvibacter Khan et al. 2008
• Gaetbulibacter Jung et al. 2005
• Gaetbulimicrobium Yoon et al. 2006，为Aquimarina Nedashkovskaya et al. 2005的异名
• Galbibacter Khan et al. 2007
  • Galbibacter marinus Li et al. 2013
  • Galbibacter mesophilus Khan et al. 2007
  • Galbibacter orientalis Wei et al. 2023^[15]
  • Galbibacter pacificus Wei et al. 2023^[15]
• Gangjinia Lee et al. 2011
• Gelatiniphilus Tang et al. 2016
• 冰冷杆菌属 Gelidibacter Bowman et al. 1997
• Geojedonia Park et al. 2013
• Gillisia Van Trappen et al. 2004
  • Gillisia hiemivivida Bowman and Nichols 2005
  • Gillisia illustrilutea Bowman and Nichols 2005
  • Gillisia limnaea Van Trappen et al. 2004
  • Gillisia lutea Vidal-Verdú et al. 2023^[16]
  • Gillisia marina Roh et al. 2013
  • Gillisia mitskevichiae Nedashkovskaya et al. 2005
  • Gillisia myxillae Lee et al. 2006
  • Gillisia sandarakina Bowman and Nichols 2005
• Gilvibacter Khan et al. 2007
• 革兰菌属 Gramella Nedashkovskaya et al. 2005
• 盐黄杆菌属 Haloflavibacter Feng et al. 2020
• Hanstruepera Hameed et al. 2015
• Hoppeia Kwon et al. 2014
• Hwangdonia Jung et al. 2013
• 李玄顺菌属 Hyunsoonleella Yoon et al. 2010
• Ichthyenterobacterium Shakeela et al. 2015
• Imtechella Surendra et al. 2012
• Jejudonia Park et al. 2013
• Jejuia Lee et al. 2009
• 苏特氏菌属 Joostella Quan et al. 2008
• 科迪亚菌属 Kordia Sohn et al. 2004
• Kriegella Nedashkovskaya et al. 2008
• Krokinobacter Khan et al. 2006，为Dokdonia Yoon et al. 2005的异名
• 湖养菌属 Lacinutrix Bowman and Nichols 2005
• 莱文虎克菌属 Leeuwenhoekiella Nedashkovskaya et al. 2005
• Leptobacterium Mitra et al. 2009
• Litoribaculum Jin and Jeon 2015
• Lutaonella Arun et al. 2009
• 淤泥杆菌属 Lutibacter Choi and Cho 2006
• Lutimonas Yang et al. 2007
  • Lutimonas halocynthiae Kim et al. 2014
  • Lutimonas saemankumensis (Yoon et al. 2008) Kim et al. 2014
  • Lutimonas vermicola Yang et al. 2007
  • Lutimonas zeaxanthinifaciens Jung et al. 2024
• 红树林单胞菌属 Mangrovimonas Li et al. 2013
• 栖海杆菌属 Maribacter Nedashkovskaya et al. 2004
• Mariniflexile Nedashkovskaya et al. 2006
  • Mariniflexile aquimaris Jung et al., 2012
  • Mariniflexile fucanivorans Barbeyron et al., 2008
  • Mariniflexile gromovii Nedashkovskaya et al., 2006
  • Mariniflexile jejuense Jung & Yoon, 2013
  • Mariniflexile maritimum Ko et al. 2021^[17]
  • Mariniflexile ostreae Park et al., 2015
  • Mariniflexile soesokkakense Park et al., 2014
• Marinirhabdus Wu et al. 2016
• Marinivirga Park et al. 2013
• Maripseudobacter Chen et al. 2017，异名
• Maritimimonas Park et al. 2009
• Marixanthomonas Romanenko et al. 2007
• Marixanthotalea Fu et al. 2023
  • Marixanthotalea marina Fu et al. 2023^[18]
• Meridianimaribacter Wang et al. 2010
• Mesoflavibacter Asker et al. 2008
• 中度喜盐杆菌属 Mesohalobacter Feng et al. 2020
• 海研站菌属 Mesonia Nedashkovskaya et al. 2003
• 鼠尾菌属 Muricauda Bruns et al. 2001
• Muriicola Kahng et al. 2010
  • Muriicola jejuensis Kahng et al., 2010
  • Muriicola marianensis Hu et al., 2015
  • Muriicola soli Kang et al. 2021^[19]
• 类香味菌属 Myroides Vancanneyt et al. 1996
• Namhaeicola Jung et al. 2012
• Neptunitalea Yoon and Kasai 2015
  • Neptunitalea chrysea Yoon and Kasai 2015^[20]
• Nonlabens Lau et al. 2005
• Oceanihabitans Zhang et al. 2016
• Olleya Mancuso Nichols et al. 2005
• Paenimyroides Zhang et al. 2023
  • Paenimyroides aestuarii Zhang et al. 2023^[21]
  • Paenimyroides anatoliense (Kacagan et al. 2013) Zhang et al. 2023，也拼作：Paenimyroides anatoliensis
  • Paenimyroides aquimaris (García-López et al. 2020) Zhang et al. 2023
  • Paenimyroides baculatum (Chhetri et al. 2021) Zhang et al. 2023
  • Paenimyroides ceti (Vela et al. 2007) Zhang et al. 2023
  • Paenimyroides cloacae (Liu et al. 2017) Zhang et al. 2023
  • Paenimyroides naphthae (Chaudhary and Kim 2018) Zhang et al. 2023
  • Paenimyroides tangerinum (Li et al. 2020) Zhang et al. 2023
  • Paenimyroides ummariense (Lata et al. 2012) Zhang et al. 2023
  • Paenimyroides viscosum (Li et al. 2020) Zhang et al. 2023
• 副研站菌属 Paramesonia Wang et al. 2020
• Pareuzebyella Huang et al. 2021
• Patiriisocius Kawano et al. 2020
  • Patiriisocius marinus
  • Patiriisocius marinistellae Kawano et al. 2020^[22]
• Paucihalobacter Wu et al. 2020
• Pelagihabitans Wang et al. 2020
• Persicivirga O'Sullivan et al. 2006，为Nonlabens Lau et al. 2005的异名
• Pibocella Nedashkovskaya et al. 2005
• Planktosalinus Zhong et al. 2016
• 极地杆菌属 Polaribacter Gosink et al. 1998
• Pontimicrobium Janthra et al. 2020
• Pontirhabdus Yi et al. 2011，为Algibacter Nedashkovskaya et al. 2004的异名
• 喜滨珊瑚菌属 Poritiphilus Wang et al. 2020
• Postechiella Lee et al. 2012
• Pricia Yu et al. 2012
• Pseudalgibacter Li et al. 2022
  • Pseudalgibacter alginicilyticus (Sun et al. 2016) Li et al. 2022^[23]
• Pseudobizionia Park et al. 2018
• Pseudofulvibacter Yoon et al. 2013
• 伪黏着杆菌属 Pseudotenacibaculum Huang et al. 2016
• Pseudozobellia Nedashkovskaya et al. 2009
• 冷弯曲菌属 Psychroflexus Bowman et al. 1999
• 冷蛇菌属 Psychroserpens Bowman et al. 1997
• Pustulibacterium Wang et al. 2013
• Robertkochia Hameed et al. 2014
• Robiginitalea Cho and Giovannoni 2004
  • Robiginitalea aestuariiviva Cao et al. 2023^[24]
  • Robiginitalea aurantiaca Zhou et al. 2023
  • Robiginitalea biformata Cho and Giovannoni 2004
  • Robiginitalea marina Xuan et al. 2023
  • Robiginitalea myxolifaciens Manh et al. 2008
  • Robiginitalea sediminis Zhang et al. 2020
• Sabulilitoribacter Park et al. 2014
• 需盐杆菌属 Salegentibacter McCammon and Bowman 2000
• 盐坑微菌属 Salinimicrobium Lim et al. 2008
• Sandarakinotalea Khan et al. 2006，为Nonlabens Lau et al. 2005的异名
• Saonia Fagervold et al. 2017
• Sediminibacter Khan et al. 2007
• 栖沉积物杆菌属 Sediminicola Khan et al. 2006
• 西南海栖菌属 Seonamhaeicola Park et al. 2014
• Siansivirga Hameed et al. 2013
• 中华微杆菌属 Sinomicrobium Xu et al. 2013
• Snuella Yi and Chun 2011
• Spongiibacterium Yoon and Oh 2012，为'Flagellimonas Bae et al. 2007的异名
• Spongiiferula Yoon et al. 2016
• Spongiimicrobium Yoon et al. 2016
• Spongiivirga Yoon et al. 2015
• Stanierella Nedashkovskaya et al. 2005，为Aquimarina Nedashkovskaya et al. 2005的异名
• Stenothermobacter Lau et al. 2006，为Nonlabens Lau et al. 2005的异名
• Subsaxibacter Bowman and Nichols, 2005
• Subsaximicrobium Bowman and Nichols, 2005
• Sungkyunkwania Yoon et al. 2013
  • Sungkyunkwania multivorans Yoon et al. 2013^[25]
• Taeania Jung et al. 2016
• 济州岛古名菌属 Tamlana Lee 2007
• 黏着杆菌属 Tenacibaculum Suzuki et al. 2001
• Thermobacterium Chen et al. 2023
  • Thermobacterium salinum Chen et al. 2023^[26]
• Ulvibacter Nedashkovskaya et al. 2004
• Ulvibacterium Zhang et al. 2021
• Urechidicola Shin and Yi 2020
• Vitellibacter Nedashkovskaya et al. 2003，为Aequorivita Bowman and Nichols 2002的异名
• Wangia Qin et al. 2007，为王祖农菌属 （Zunongwangia Qin et al. 2007）的异名
• 庄文颖氏菌属 Wenyingzhuangia Liu et al. 2014
• 维诺格拉斯基氏菌属 Winogradskyella Nedashkovskaya et al. 2005
• 卧蚕菌属 Wocania He et al. 2020
• Xanthomarina Vaidya et al. 2015
  • Xanthomarina gelatinilytica Vaidya et al. 2015
  • Xanthomarina spongicola (Yoon and Oh 2011) García-López et al. 2020
• Yeosuana Kwon et al. 2006
  • Yeosuana aromativorans Kwon et al., 2006
  • Yeosuana marina Zhang et al. 2020^[27]
• Zeaxanthinibacter Asker et al. 2007
  • Zeaxanthinibacter aestuarii Lee et al. 2016
  • Zeaxanthinibacter enoshimensis Asker et al. 2007
• 周氏菌属 Zhouia Liu et al. 2006，周培瑾氏菌，以中科院微生物研究所研究员周培瑾的名字命名
  • Zhouia amylolytica Liu et al. 2006
  • Zhouia spongiae Zhuang et al. 2018
• Zobellia Barbeyron et al. 2001
  • Zobellia alginiliquefaciens Barbeyron et al. 2023^[28]
  • Zobellia amurskyensis Nedashkovskaya et al. 2004
  • Zobellia barbeyronii Nedashkovskaya et al. 2022
  • Zobellia galactanivorans corrig. Barbeyron et al. 2001
  • Zobellia galactanovorans Barbeyron et al. 2001
  • Zobellia laminariae Nedashkovskaya et al. 2004
  • Zobellia nedashkovskayae Barbeyron et al. 2021
  • Zobellia roscoffensis Barbeyron et al. 2021
  • Zobellia russellii Nedashkovskaya et al. 2004
  • Zobellia uliginosa (ZoBell and Upham 1944) Barbeyron et al. 2001
• 王祖农菌属 Zunongwangia Qin et al. 2007