Alpha operon ribosome binding site

The alpha operon ribosome binding site in bacteria is surrounded by this complex pseudoknotted RNA structure. Translation of the mRNA produces 4 ribosomal protein products, one of which (S4) acts as a translational repressor by binding to the nested pseudoknot region. The mechanism of repression is thought to involve a conformational switch in the pseudoknot region and ribosome entrapment.^[1]

Alpha operon ribosome binding site
Predicted secondary structure and sequence conservation of Alpha_RBS
Identifiers
Symbol	Alpha_RBS
Rfam	RF00140
Other data
RNA type	Cis-reg
Domain(s)	Bacteria
SO	SO:0000233
PDB structures	PDBe