Bacteroidales-1 RNA motif

The Bacteroidales-1 RNA motif is a conserved RNA structure identified by bioinformatics.^[1] It has been identified only in bacteria within the order (biology) Bacteroidales. Its presumed length is marked by a promoter on one end that conforms to an alternate consensus sequence that is common in the phylum Bacteroidota, and its 3′ end is indicated by predicted transcription terminators.^[2] It is often located downstream of a gene that encodes the L20 ribosomal subunit, although it is unclear whether there is a functional reason underlying this apparent association.^[1]

Bacteroidales-1 RNA
Consensus secondary structure of Bacteroidales-1 RNAs
Identifiers
Symbol	Bacteroidales-1
Rfam	RF01693
Other data
RNA type	sRNA
Domain(s)	Bacteroidales
PDB structures	PDBe

Bacteroidales-1 RNA motif has been reported as a 6S RNA homologue by a report of Bacteroides thetaiotaomicron transcriptome map.^[3] The existence of small product RNAs (pRNAs) that rescue sequestered RNA polymerases, validated 6S RNA-mediated regulation of transcriptional activity.

See also

• Acido-Lenti-1 RNA motif
• Collinsella-1 RNA motif
• Chloroflexi-1 RNA motif
• Flavo-1 RNA motif