List of long non-coding RNA databases

This is a list of long noncoding RNA databases, which provide information about lncRNAs.^[1][2]

Long non-coding RNA databases

Name	Description	References
deepBase	Identification, expression, evolution and function of long non-coding RNAs (LncRNAs), small RNAs and circular RNAs from deep-sequencing data	[3]
LNCipedia	A comprehensive compendium of human long non-coding RNAs.	[4][5]
lncRNAdb	The Reference Database For Functional Long Noncoding RNAs.	[6]
LncRNAWiki	A wiki-based, publicly editable and open-content platform for community curation of human long non-coding RNAs (lncRNAs)	[7]
LncBook	A comprehensive collection of 270,044 human lncRNAs and systematic curation of lncRNAs’ annotation by multi-omics data integration, function annotation and disease association	[8]
MONOCLdb	The MOuse NOnCode Lung database provides the annotations and expression profiles of mouse long non-coding RNAs (lncRNAs) involved in influenza and SARS-CoV infections.	[9]
NONCODE	An integrated knowledge database dedicated to ncRNAs, especially lncRNAs	[10]
lncRNome	A comprehensive searchable biologically oriented knowledgebase for long noncoding RNAs in Humans.
NRED	A database of long noncoding RNA expression.	[11]
C-It-Loci	A tool to explore and to compare the expression profiles of conserved loci among various tissues in three organisms	[12]
MiTranscriptome	A catalog of human long poly-adenylated RNA transcripts derived from computational analysis of high-throughput RNA-Seq data from over 6,500 samples, spanning diverse cancer and tissue types	[13]
slncky Evolution Browser	This site contains alignments and evolutionary metrics of conserved lncRNAs.	[14]
Cancer LncRNA Census (CLC)	Database of long-noncoding RNAs causally implicated in cancer through in vivo, in vitro and other evidence.	[15]
BIGTranscriptome	High-confidence of coding and noncoding transcriptomes assembled with hundreds of pseudo-stranded and stranded RNA-seq datasets.	[16]
lncRNAKB	A knowledgebase of tissue-specific functional annotation and trait association of long noncoding RNA	[17]
lncHUB2	Functional predictions of human and mouse long non-coding RNAs based on lncRNA-gene co-expression correlations.	[18]