PathoPhenoDB

PathoPhenoDB is a biological database.^[1] The database connects pathogens to their phenotypes using multiple databases such as NCBI, Human Disease Ontology^[2] Human Phenotype Ontology,^[3] Mammalian Phenotype Ontology,^[4] PubChem, SIDER^[5] and CARD.^[6] Pathogen-disease associations were gathered mainly through the CDC and the List of Infectious Diseases page on Wikipedia. The manner by which they assigned taxonomy was semi-automatic. When mapped against NCBI Taxonomy, if the pathogen was not an exact match, it was then mapped to the parent class. PathoPhenoDB employs NPMI^[7] in order to filter pairs based on their co-occurrence statistics.

See also

• Antimicrobial Resistance databases