Spinal Cord Toolbox
From Wikipedia, the free encyclopedia
Spinal Cord Toolbox (SCT) [1] is a suite of analysis tools optimized for spinal cord images acquired with magnetic resonance imaging. Main features include segmentation, registration and calculation of anatomical metrics.
 | This article needs additional citations for verification. (July 2016) |
| Developer(s) | NeuroPoly |
|---|---|
| Stable release | 3.0.3
/ 26 April 2017 |
| Repository | github |
| Written in | Python |
| Operating system | Linux, Mac OS X |
| Size | 140 MB |
| Available in | English |
| Type | Digital imaging |
| License | MIT Licence |
Features
- Propseg Automatic spinal cord segmentation.[2]
- The PAM50 template is an anatomical template of the spinal cord that covers the full spinal cord and brainstem and is available for T1-, T2- and T2*-weighted MRI contrasts. The PAM50 template includes probabilistic segmentation of white matter, gray matter, CSF as well as probabilistic atlases of gray matter subregions and white matter pathways.[3][4] The template also include segmentation of spinal levels for automatic assessment of metrics at specific locations.[5]
- A White Matter atlas including 29 partial volume masks of which matter tracts.[6]
References
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