StarBase (biological database)
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StarBase[2] is a database for decoding miRNA-mRNA, miRNA-lncRNA,[3] miRNA-sncRNA, miRNA-circRNA,[3] miRNA-pseudogene, protein-lncRNA,[4] protein-ncRNA, protein-mRNA interactions, and ceRNA networks[5] from CLIP-Seq (HITS-CLIP, PAR-CLIP, iCLIP, CLASH) and degradome sequencing data.[1][6] StarBase provides miRFunction and ceRNAFunction web tools to predict the function of ncRNAs (miRNAs, lncRNAs, pseudogenes) and protein-coding genes from the miRNA and ceRNA[7] regulatory networks. StarBase also developed Pan-Cancer Analysis Platform to decipher Pan-Cancer Analysis Networks of lncRNAs, miRNAs, ceRNAs, and RNA-binding proteins (RBPs) by mining clinical and expression profiles of 14 cancer types (including more than six thousand samples) from The Cancer Genome Atlas (TCGA) Data Portal.
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| Content | |
|---|---|
| Description | microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data. |
| Contact | |
| Research center | Sun Yat-sen University |
| Laboratory | Key Laboratory of Gene Engineering of the Ministry of Education |
| Authors | Jian-Hua Yang |
| Primary citation | Yang & al. (2011)[1] |
| Release date | 2010 |
| Access | |
| Website | http://starbase.sysu.edu.cn/ |
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