PDLIM5

PDZ and LIM domain protein 5 is a protein that in humans is encoded by the PDLIM5 gene.^[5][6]

PDLIM5
Available structures PDB Ortholog search: PDBe RCSB List of PDB id codes 2UZC, 2DAR
Identifiers
Aliases	PDLIM5, ENH, ENH1, LIM, L9, PDZ and LIM domain 5
External IDs	OMIM: 605904; MGI: 1927489; HomoloGene: 21289; GeneCards: PDLIM5; OMA:PDLIM5 - orthologs
Gene location (Human) Chr. Chromosome 4 (human)[1] Band 4q22.3 Start 94,451,857 bp[1] End 94,668,227 bp[1]
Gene location (Mouse) Chr. Chromosome 3 (mouse)[2] Band 3|3 H1 Start 141,945,351 bp[2] End 142,101,457 bp[2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in Skeletal muscle tissue of biceps brachii Skeletal muscle tissue of rectus abdominis right ventricle triceps brachii muscle glutes thoracic diaphragm Epithelium of choroid plexus muscle of thigh gastrocnemius muscle body of tongue Top expressed in soleus muscle myocardium of ventricle atrioventricular valve muscle of thigh quadriceps femoris muscle vastus lateralis muscle interventricular septum sternocleidomastoid muscle tibialis anterior muscle medial head of gastrocnemius muscle More reference expression data BioGPS More reference expression data
Gene ontology Molecular function protein binding metal ion binding protein N-terminus binding actin binding actinin binding protein kinase C binding cadherin binding involved in cell-cell adhesion muscle alpha-actinin binding Cellular component cytoplasm cell junction neuron projection postsynaptic membrane plasma membrane synapse actin cytoskeleton membrane postsynaptic density cytosol stress fiber Z discdkac filamentous actin Biological process regulation of dendritic spine morphogenesis regulation of synapse assembly cell-cell adhesion cell growth involved in cardiac muscle cell development heart development actin cytoskeleton organization muscle structure development Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 10611 56376 Ensembl ENSG00000163110 ENSMUSG00000028273 UniProt Q96HC4 Q8CI51 RefSeq (mRNA) NM_001011513 NM_001011515 NM_001011516 NM_001256425 NM_001256426 NM_001256427 NM_001256428 NM_001256429 NM_006457 NM_001190852 NM_001190853 NM_001190854 NM_001190855 NM_001190856 NM_001190857 NM_019808 NM_019809 NM_022554 RefSeq (protein) NP_001011513 NP_001011515 NP_001011516 NP_001243354 NP_001243355 NP_001243356 NP_001243357 NP_001243358 NP_006448 NP_001177781 NP_001177782 NP_001177783 NP_001177784 NP_001177785 NP_001177786 NP_062782 NP_062783 NP_072048 Location (UCSC) Chr 4: 94.45 – 94.67 Mb Chr 3: 141.95 – 142.1 Mb PubMed search [3] [4]
Wikidata
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The protein encoded by this gene is a LIM domain protein. LIM domains are cysteine-rich double zinc fingers composed of 50 to 60 amino acids that are involved in protein-protein interactions. LIM domain-containing proteins are scaffolds for the formation of multiprotein complexes. The proteins are involved in cytoskeleton organization, cell lineage specification, organ development, and oncogenesis. The encoded protein is also a member of the Enigma class of proteins, a family of proteins that possess a 100-amino acid PDZ domain in the N-terminus and 1 to 3 LIM domains in the C terminus. Multiple transcript variants encoding different isoforms have been found for this gene, although not all of them have been fully characterized.^[6]

Interactions

PDLIM5 has been shown to interact with PRKCB1.^[7]