RFX4

Transcription factor RFX4 is a protein that in humans is encoded by the RFX4 gene.^[5][6][7]

RFX4
Identifiers
Aliases	RFX4, NYD-SP10, regulatory factor X4
External IDs	OMIM: 603958; MGI: 1918387; HomoloGene: 31119; GeneCards: RFX4; OMA:RFX4 - orthologs
Gene location (Human) Chr. Chromosome 12 (human)[1] Band 12q23.3 Start 106,583,004 bp[1] End 106,762,803 bp[1]
Gene location (Mouse) Chr. Chromosome 10 (mouse)[2] Band 10|10 C1 Start 84,591,926 bp[2] End 84,742,402 bp[2]
RNA expression pattern Bgee Human Mouse (ortholog) Top expressed in left testis right testis external globus pallidus ventricular zone internal globus pallidus sperm caudate nucleus Amygdala nucleus accumbens superior vestibular nucleus Top expressed in lumbar subsegment of spinal cord spermatocyte spermatid suprachiasmatic nucleus Rostral migratory stream globus pallidus ventricular zone deep cerebellar nuclei seminiferous tubule dorsal tegmental nucleus More reference expression data BioGPS n/a
Gene ontology Molecular function RNA polymerase II cis-regulatory region sequence-specific DNA binding DNA binding DNA-binding transcription activator activity, RNA polymerase II-specific chromatin binding protein binding DNA-binding transcription factor activity, RNA polymerase II-specific DNA-binding transcription factor activity Cellular component nucleus Biological process regulation of transcription by RNA polymerase II forebrain development telencephalon development dorsal spinal cord development regulation of transcription, DNA-templated negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning cerebellar cortex morphogenesis midbrain development positive regulation of transcription by RNA polymerase II regulation of protein processing transcription, DNA-templated transcription by RNA polymerase II cilium assembly Sources:Amigo / QuickGO
Orthologs Species Human Mouse Entrez 5992 71137 Ensembl ENSG00000111783 ENSMUSG00000020037 UniProt Q33E94 Q7TNK1 RefSeq (mRNA) NM_213594 NM_001206691 NM_002920 NM_032491 NM_001024918 NM_027689 RefSeq (protein) NP_001193620 NP_115880 NP_998759 NP_001020089 NP_081965 Location (UCSC) Chr 12: 106.58 – 106.76 Mb Chr 10: 84.59 – 84.74 Mb PubMed search [3] [4]
Wikidata
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This gene is a member of the regulatory factor X gene family, which encodes transcription factors that contain a highly conserved winged helix DNA binding domain. The protein encoded by this gene is structurally related to regulatory factors X1, X2, X3, and X5. It has been shown to interact with itself as well as with regulatory factors X2 and X3, but it does not interact with regulatory factor X1. This protein may be a transcriptional repressor rather than a transcriptional activator. Three transcript variants encoding different isoforms have been described for this gene.^[7]