| Mine | Produce | !Coordinates | Associated town | Owner | Opened | Closed | Comments | 
| Ichinokawa Mine[1][2] | Antimony | 33.889°N 133.219°E / 33.889; 133.219 | Saijō, Ehime |  | 1659 | 1957 |  | 
| Kimu mine[3] | Antimony | 26.499°N 127.903°E / 26.499; 127.903 | Okinawa Island |  | ? | ? |  | 
| Tsugu mine[4][5] | Antimony | 35.178°N 137.629°E / 35.178; 137.629 | Shitara, Aichi |  | 15## | 1956 |  | 
| Obira mine[6] | Arsenic | 32.842°N 131.578°E / 32.842; 131.578 | Bungo-ōno, Oita |  | ? | ? | also contains boron and fluorine minerals | 
| Matsuiwa mine[7] | Arsenic | 38.967°N 141.519°E / 38.967; 141.519 | Kesennuma, Miyagi |  | 1949 | 1974 | also contains some uranium, silver and gold | 
| Sasagatani mine[8] | Arsenic | 34.549°N 131.703°E / 34.549; 131.703 | Tsuwano, Shimane |  | ? | ? | closed | 
| Akenobe mine[9] | Arsenic | 35.283°N 134.667°E / 35.283; 134.667 | Yabu, Hyōgo |  | 1908 | 1987 |  | 
| Nozawa mine [ja] | Asbestos | 43.267°N 142.403°E / 43.267; 142.403 | Furano, Hokkaido |  | 1942 | 1969 |  | 
| Gunma-tetsuzan[10] | Barium | 36.653°N 138.597°E / 36.653; 138.597 | Nakanojō, Gunma |  | 1943 | 1975 |  | 
| Minamishiraoi baryte mine[11] | Barium | 42.661°N 141.226°E / 42.661; 141.226 | Shiraoi, Hokkaido |  | 1950 | 1988 |  | 
| Otaru-Matsukura mine [ja] | Barium | 43.127°N 140.964°E / 43.127; 140.964 | Otaru |  | 1932 | 1979 |  | 
| Fukuoka mine[12] | Beryllium | 35.586°N 137.468°E / 35.586; 137.468 | Nakatsugawa, Gifu | Furukawa | ? | ? | Closed | 
| Sannotake mine[13][14] | Bismuth | 33.7°N 130.85°E / 33.7; 130.85 | Tagawa, Fukuoka |  | ? | ? | includes Yokozuru mine | 
| Fukuoka mine[12] | Bismuth | 35.586°N 137.468°E / 35.586; 137.468 | Nakatsugawa, Gifu | Furukawa | ? | ? | Closed | 
| Inaushi mine[15] | Bismuth | 43.242°N 143.722°E / 43.242; 143.722 | Kitami, Hokkaido |  | 1934 | 1964 |  | 
| Hosokura mine[16][17] | Cadmium | 38.808°N 140.9°E / 38.808; 140.9 | Kurihara, Miyagi |  | 1898 | 1977 | now become an amusement park | 
| Fuka mine[18] | Calcite | 34.767°N 133.433°E / 34.767; 133.433 | Takahashi, Okayama |  | ? | open | high purity, used for toothpaste | 
| Hirose mine[19] | Chromium | 35.067°N 133.2°E / 35.067; 133.2 | Hino, Tottori |  | ? | ? | closed | 
| Nittō mine[20] | Chromium | 42.572°N 142.287°E / 42.572; 142.287 | Saru, Hokkaido |  | 1917 | 1959 |  | 
| Amakusa coalfield[21] | coal | 32.25°N 130.06°E / 32.25; 130.06 | Amakusa |  | 186# | 1963 | closed but not depleted | 
| Mogami coal field[22][23][24] | coal | 38.613°N 140.331°E / 38.613; 140.331 | Ōishida, Yamagata |  | ? | open | lignite rich in germanium | 
| Iwate mine[25] | coal | 39.885°N 141.631°E / 39.885; 141.631 | Iwaizumi, Iwate |  | ? | ? |  | 
| Hokutan Horonai coal mine | coal | 43.221°N 141.909°E / 43.221; 141.909 | Mikasa, Hokkaido | Hokutan | 1879 | 1989 | Went Bankrupt | 
| Kami-sunagawa coal mine | coal | 43.476°N 141.992°E / 43.476; 141.992 | Kamisunagawa | Mitsui | 1915 | 1986 | Japan Microgravity Centre | 
| Hokutan Yūbari mine | coal | 43.064°N 141.985°E / 43.064; 141.985 | Yūbari | Hokutan | 1890 | 197# | Went Bankrupt | 
| Hokutan Ikushunbetsu coal mine | coal | 43.261°N 141.968°E / 43.261; 141.968 | Ikushunbetsu | Hokutan | 1885 | 1957 |  | 
| Miike coal mine | coal | 33.014°N 130.456°E / 33.014; 130.456 | Ōmuta | Tachibana clan | 1872 | 1997 |  | 
| Mitsubishi Hashima coal mine | coal | 32.628°N 129.738°E / 32.628; 129.738 | Hashima | Mitsubishi | 1869 | 1974 | Closed | 
| Iriomote Coal Mine | coal | 24.333°N 123.8°E / 24.333; 123.8 | Iriomote | Mitsui | 1886 | 1960 | Closed | 
| Utara Coal Mine | coal | 24.302°N 123.707°E / 24.302; 123.707 | Iriomote | Marusan Mining Company | 1936 | 1943 | Closed | 
| Shirataki mine[26][27][28] | Cobalt | 33.828°N 133.472°E / 33.828; 133.472 | Ōkawa, Kōchi | Nippon Mining Co | ? | ? |  | 
| Besshi copper mine[29][30] | Copper | 33.853°N 133.314°E / 33.853; 133.314 | Niihama, Ehime | Sumitomo | 1691 | 1973 |  | 
| Chiyogahara mine[31] | Cobalt | 38.867°N 141.35°E / 38.867; 141.35 | Fujisawa, Iwate |  | ? | ? |  | 
| Hitachi mine[32][33] | Cobalt | 36.629°N 140.606°E / 36.629; 140.606 | Hitachi, Ibaraki |  | 1905 | 1974 |  | 
| Kune mine[34] | Cobalt | 35.085°N 137.833°E / 35.085; 137.833 | Hamamatsu, Shizuoka |  | 1897 | open |  | 
| Tenryū mine[34][35] | Cobalt | 35.283°N 137.85°E / 35.283; 137.85 | Tenryū, Nagano |  | ? | open |  | 
| Naganobori mine[36] | Cobalt | 34.245°N 131.336°E / 34.245; 131.336 | Mine, Yamaguchi |  | 1941 | 1945 |  | 
| Shimokawa mine[37] | Cobalt | 44.215°N 142.701°E / 44.215; 142.701 | Shimokawa, Hokkaido |  | 1941 | 1979 |  | 
| Kosaka mine[38] | Copper | 40.337°N 140.754°E / 40.337; 140.754 | Kosaka, Akita | Dowa Holdings | 18## | ? |  | 
| Hanaoka mine[39] | Copper | 40.309°N 140.552°E / 40.309; 140.552 | Ōdate, Akita | Kajima, Dowa mining | 1885 | ? | the site of Hanaoka Incident during WWII[40] | 
| Nonowaki mine[41][42] | Copper | 33.9°N 134.247°E / 33.9; 134.247 | Naka, Tokushima |  | ? | 196# |  | 
| Minawa mine[43] | Copper | 33.992°N 133.786°E / 33.992; 133.786 | Miyoshi, Tokushima |  | 1956 | 1970 |  | 
| Shirataki mine[26][27][28] | Copper | 33.828°N 133.472°E / 33.828; 133.472 | Ōkawa, Kōchi | Nippon Mining Co | ? | ? |  | 
| Shingu mine[44][45] | Copper | 33.933°N 133.633°E / 33.933; 133.633 | Shikokuchūō, Ehime |  | 1911 | 1975 | also diamond-bearing Lherzolite | 
| Motoyasu mine[46] | Copper | 33.796°N 133.253°E / 33.796; 133.253 | Saijō, Ehime |  | 1877 | 1972 |  | 
| Ōkuki mine[47][48] | Copper | 33.514°N 132.656°E / 33.514; 132.656 | Uchiko, Ehime |  | ? | ? |  | 
| Sazare mine[49][50][51] | Copper | 33.904°N 133.542°E / 33.904; 133.542 | Niihama, Ehime |  | ? | 1979 |  | 
| Ikadazu mine[52] | Copper | 33.832°N 133.383°E / 33.832; 133.383 | Niihama, Ehime |  | ? | 1973 |  | 
| Besshi copper mine[29][30] | Copper | 33.853°N 133.314°E / 33.853; 133.314 | Niihama, Ehime | Sumitomo | 1691 | 1973 |  | 
| Yuryo mine[53][54] | Copper | 33.707°N 132.803°E / 33.707; 132.803 | Iyo, Ehime |  | 1938 | 1954 |  | 
| Hirota mine[55][56] | Copper | 33.65°N 132.8°E / 33.65; 132.8 | Iyo, Ehime |  | 1917 | 1930 |  | 
| Takaura mine[57][58] | Copper | 33.376°N 132.122°E / 33.376; 132.122 | Ikata, Ehime |  | 1914 | 1965 |  | 
| Ōku mine[59] | Copper | 33.412°N 132.181°E / 33.412; 132.181 | Ikata, Ehime |  | ? | closed |  | 
| Obira mine[6] | Copper | 32.842°N 131.578°E / 32.842; 131.578 | Bungo-ōno, Oita |  | ? | ? | also contains boron and fluorine minerals | 
| Matsubara-douzan mine[60] | Copper | 27.861°N 128.917°E / 27.861; 128.917 | Tokunoshima |  | 1903 | 1928 |  | 
| Moe-Tatsugo mine[61] | Copper | 28.459°N 129.61°E / 28.459; 129.61 | Amami Ōshima |  | ? | closed |  | 
| Mitate mine[62][63] | Copper | 32.775°N 131.472°E / 32.775; 131.472 | Hinokage, Miyazaki | Rasa Industries | 1915 | 1970 | on slopes of Mount Sobo | 
| Makimine mine[64][65][66] | Copper | 32.63°N 131.458°E / 32.63; 131.458 | Hinokage, Miyazaki | Mitsubishi | 194x | ? |  | 
| Iwato mine[67][68] | Copper | 31.277°N 130.326°E / 31.277; 130.326 | Makurazaki, Kagoshima |  | ? | ? |  | 
| Sannotake mine[13][14] | Copper | 33.7°N 130.85°E / 33.7; 130.85 | Tagawa, Fukuoka |  | ? | ? | includes Yokozuru mine | 
| Yoshiwara mine[69][70] | Copper | 33.75°N 130.85°E / 33.75; 130.85 | Kitakyushu, Fukuoka |  | 1910 | 1971 |  | 
| Ōizumi mine[71][72][73] | Copper | 38.413°N 139.728°E / 38.413; 139.728 | Tsuruoka, Yamagata |  | 1882 | 1950 |  | 
| Ohori mine[74][75] | Copper | 38.746°N 140.464°E / 38.746; 140.464 | Mogami, Yamagata |  | ? | ? |  | 
| Isobe-Koyama mine[76][77] | Copper | 38.45°N 140.217°E / 38.45; 140.217 | Sagae, Yamagata |  | 1932 | 1977 |  | 
| Akayama mine[78][79] | Copper | 38.074°N 140.303°E / 38.074; 140.303 | Naragejuku, Yamagata |  | 16xx | 1972 | also contains some zinc, silver and gold | 
| Matsuiwa mine[7] | Copper | 38.967°N 141.519°E / 38.967; 141.519 | Kesennuma, Miyagi |  | 1949 | 1974 | also contains some uranium, silver and gold | 
| Oarasawa-Akutozawa mine[80] | Copper | 39.274°N 140.894°E / 39.274; 140.894 | Waga, Iwate |  | 1907 | 1920 | 116 kt Cu produced | 
| Hanawa 2 mine[81] | Copper | 40.176°N 140.867°E / 40.176; 140.867 | Hachimantai, Iwate |  | ? | ? | not to be confused with Hanawa manganese mine in Miyako, Iwate | 
| Unekura mine[82][83] | Copper | 39.233°N 140.85°E / 39.233; 140.85 | Yuda, Iwate | Dowa Kogyo K. K. | ? | open |  | 
| Akaishi mine[84] | Copper | 39.36°N 140.792°E / 39.36; 140.792 | Yuda, Iwate |  | 1914 | 1973 |  | 
| Tsunatori mine[85] | Copper | 39.304°N 140.942°E / 39.304; 140.942 | Waga District, Iwate |  | 1908 | 1962 |  | 
| Sennin mine[86] | Copper | 39.311°N 140.889°E / 39.311; 140.889 | Waga District, Iwate |  | 1911 | 1974 | also called Wagasennin mine | 
| Mizusawa mine[87] | Copper | 39.437°N 140.776°E / 39.437; 140.776 | Waga District, Iwate |  | 1717 | ? |  | 
| Yokota mine[88][89][90] | Copper | 37.388°N 139.442°E / 37.388; 139.442 | Kaneyama, Fukushima |  | ? | ? |  | 
| Yaso mine[91] | Copper | 37.058°N 139.658°E / 37.058; 139.658 | Minamiaizu, Fukushima |  | 1952 | 1970 |  | 
| Takanokura mine[92] | Copper | 37.626°N 140.822°E / 37.626; 140.822 | Sōma, Fukushima |  | ? | ? |  | 
| Tada mine[93] | Copper | 34.893°N 135.358°E / 34.893; 135.358 | Inagawa, Hyōgo | Nihon Kogyo | 1211 | 1973 |  | 
| Tochigi mine[94] | Copper | 36.794°N 139.814°E / 36.794; 139.814 | Shioya, Tochigi |  | 1946 | 1965 |  | 
| Kidogasawa mine[95] | Copper | 36.797°N 139.7°E / 36.797; 139.7 | Nikkō, Tochigi |  | 1940 | 1974 |  | 
| Chichibu mine[96] | Copper | 36.022°N 138.817°E / 36.022; 138.817 | Ōtaki, Saitama |  | 708 | ? | first ever copper mine of Japan | 
| Fujigatani mine[97] | Copper | 34.144°N 132.017°E / 34.144; 132.017 | Iwakuni, Yamaguchi |  | 1955 | 1977 | closed | 
| Sasagatani mine[8] | Copper | 34.549°N 131.703°E / 34.549; 131.703 | Tsuwano, Shimane |  | ? | ? | closed | 
| Iwami Ginzan Silver Mine[98][99] | Copper | 35.164°N 132.442°E / 35.164; 132.442 | Ōda, Shimane |  | 130# | 1923 | world leading medieval silver producer | 
| Tsumo mine[100][101] | Copper | 34.65°N 131.986°E / 34.65; 131.986 | Masuda, Shimane |  | 195x | ? |  | 
| Yoshioka mine[102] | Copper | 34.858°N 133.458°E / 34.858; 133.458 | Takahashi, Okayama |  | 1905 | 1972 |  | 
| Sasaune mine[103][104] | Copper | 34.853°N 133.472°E / 34.853; 133.472 | Takahashi, Okayama |  | ? | 196# | also produced iron pigment | 
| Shin-mikawa mine[105] | Copper | 34.633°N 133.583°E / 34.633; 133.583 | Yakage, Okayama |  | 1916 | 1957 |  | 
| Obie mine[106] | Copper | 34.611°N 133.797°E / 34.611; 133.797 | Kurashiki, Okayama |  | 1906 | 1947 |  | 
| Yanahara mine[107][108] | Copper | 34.958°N 134.069°E / 34.958; 134.069 | Misaki, Okayama |  | 195# | 1970 | also produced iron oxide for audio tapes | 
| Takara mine[109][110] | Copper | 35.575°N 138.85°E / 35.575; 138.85 | Tsuru, Yamanashi |  | 1942 | 1962 | also produced pyrite | 
| Kune mine[34] | Copper | 35.085°N 137.833°E / 35.085; 137.833 | Hamamatsu, Shizuoka |  | 1897 | open |  | 
| Kusakura mine[111] | Copper | 37.683°N 139.483°E / 37.683; 139.483 | Kanose, Niigata | Furukawa | 1738 | ? |  | 
| Ogoya mine[112] | Copper | 36.293°N 136.592°E / 36.293; 136.592 | Komatsu, Ishikawa |  | 1884 | 1971 |  | 
| Hatasa mine[113] | Copper | 35.852°N 137.063°E / 35.852; 137.063 | Gujō, Gifu |  | 1674 | 1916 |  | 
| Nojiri mine[114] | Copper | 35.876°N 136.717°E / 35.876; 136.717 | Ōno, Fukui |  | ? | 1968 | Underwater after construction of Kuzuryu Dam | 
| Nakatatsu mine[115] | Copper | 35.873°N 136.578°E / 35.873; 136.578 | Ōno, Fukui |  | ? | ? | Closed | 
| Nakauri mine[116] | Copper | 34.849°N 137.552°E / 34.849; 137.552 | Kamaishi, Iwate |  | 1953 | 1953 | worked for 3 months | 
| Kamaishi mine[117] | Copper | 39.3°N 141.683°E / 39.3; 141.683 | Kamaishi, Iwate |  | 1727 | 1993 | Dominant iron producer of Japan pre-war | 
| Ashio copper mine[118] | Copper | 36.633°N 139.444°E / 36.633; 139.444 | Nikkō, Tochigi | Furukawa | 1600 | 1973 | Largest copper output during late 19th century, place of 1907 Ashio riot | 
| Yaguki mine[119] | Copper | 37.171°N 140.915°E / 37.171; 140.915 | Iwaki, Fukushima |  | 1945 | 1974 |  | 
| Obira mine[6] | Copper | 32.842°N 131.578°E / 32.842; 131.578 | mount Sobo in Nishiusuki, Miyazaki |  | 1617 | 1954 |  | 
| Horobetsu mine [ja][120] | Copper | 42.475°N 141.05°E / 42.475; 141.05 | Noboribetsu, Hokkaido |  | 1898 | 1973 |  | 
| Shimokawa mine[37] | Copper | 44.215°N 142.701°E / 44.215; 142.701 | Shimokawa, Hokkaido |  | 1941 | 1979 |  | 
| Kunitomi Mine [ja][121] | Copper | 43.008°N 140.658°E / 43.008; 140.658 | Shiribeshi, Hokkaido |  | 1909 | 1945 |  | 
| Suttsu mine[122] | Copper | 42.772°N 140.293°E / 42.772; 140.293 | Suttsu District, Hokkaido |  | ? | 1962 |  | 
| Akenobe mine[9] | Copper | 35.283°N 134.667°E / 35.283; 134.667 | Yabu, Hyōgo |  | 1908 | 1987 |  | 
| Myoho mine[9] | Copper | 33.653°N 135.819°E / 33.653; 135.819 | Higashimuro District, Wakayama |  | 1948 | 1965 |  | 
| Mogami coal field[22][23][24] | Germanium | 38.613°N 140.331°E / 38.613; 140.331 | Ōishida, Yamagata |  | ? | open | lignite rich in germanium | 
| Ōkuki mine[47][48] | Gold | 33.514°N 132.656°E / 33.514; 132.656 | Uchiko, Ehime |  | ? | ? |  | 
| Takaura mine[57][58] | Gold | 33.376°N 132.122°E / 33.376; 132.122 | Ikata, Ehime |  | 1914 | 1965 |  | 
| Taio gold mine[123][124] | Gold | 33.139°N 130.894°E / 33.139; 130.894 | Hita, Ōita |  | 1896 | 1972 | now museum | 
| Bajo mine[125] | Gold | 33.481°N 131.517°E / 33.481; 131.517 | Bungotakada, Ōita |  | ? | ? |  | 
| Yakushima mine[126] | Gold | 30.359°N 130.529°E / 30.359; 130.529 | Yakushima |  | ? | 1958 | leading tungsten producer | 
| Iwato mine[67][68] | Gold | 31.277°N 130.326°E / 31.277; 130.326 | Makurazaki, Kagoshima |  | ? | ? |  | 
| Onoyama mine[127] | Gold | 31.938°N 130.731°E / 31.938; 130.731 | Yūsui, Kagoshima |  | ? | ? |  | 
| Akeshi mine[128][129] | Gold | 31.31°N 130.379°E / 31.31; 130.379 | Minamikyūshū, Kagoshima |  | ? | 198x | closed | 
| Kasuga mine[130] | Gold | 31.266°N 130.275°E / 31.266; 130.275 | Makurazaki, Kagoshima |  | ? | open | silica with gold as by-product | 
| Kushikino mine[131][132] | Gold | 31.754°N 130.3°E / 31.754; 130.3 | Kushikino, Kagoshima | Mitsui mining | 195# | closed |  | 
| Yamagano mine[133][134] | Gold | 31.919°N 130.617°E / 31.919; 130.617 | Kirishima, Kagoshima |  | 1642 | 1965 |  | 
| Hishikari mine[135][136][137] | Gold | 31.992°N 130.708°E / 31.992; 130.708 | Yūsui, Kagoshima | Sumitomo Metal Mining | 1985 | open | the only open gold mine of Japan as in 2014 | 
| Fuke mine[138][139][140] | Gold | 32.15°N 130.617°E / 32.15; 130.617 | Isa, Kagoshima | Toa mining | 1937 | 1976 | also nearby Okuchi mine | 
| Sannotake mine[13][14] | Gold | 33.7°N 130.85°E / 33.7; 130.85 | Tagawa, Fukuoka |  | ? | ? | includes Yokozuru mine | 
| Yoshino mine[141][142][143][144] | Gold | 38.153°N 140.197°E / 38.153; 140.197 | Nan'yō, Yamagata |  | ? | 1975 |  | 
| Isobe-Koyama mine[76][77] | Gold | 38.45°N 140.217°E / 38.45; 140.217 | Sagae, Yamagata |  | 1932 | 1977 |  | 
| Oya mine[145] | Gold | 38.867°N 141.522°E / 38.867; 141.522 | Motoyoshi, Miyagi |  | 1915 | 1971 |  | 
| Tsunatori mine[85] | Gold | 39.304°N 140.942°E / 39.304; 140.942 | Waga District, Iwate |  | 1908 | 1962 |  | 
| Nakase mine[146] | Gold | 35.358°N 134.625°E / 35.358; 134.625 | Yabu, Hyōgo |  | ? | ? |  | 
| Ōmidani mine[147] | Gold | 35.246°N 134.647°E / 35.246; 134.647 | Shisō, Hyōgo |  | 1961 | 1983 |  | 
| Takeno mine[148] | Gold | 35.611°N 134.736°E / 35.611; 134.736 | Kinosaki, Hyōgo |  | ? | ? |  | 
| Asahi mine[149] | Gold | 34.902°N 134.314°E / 34.902; 134.314 | Asago, Hyōgo |  | 1921 | 1985 |  | 
| Nebazawa mine[150][151] | Gold | 36.871°N 139.322°E / 36.871; 139.322 | Katashina, Gunma |  | 1961 | 1982 |  | 
| Iwami Ginzan Silver Mine[98][99] | Gold | 35.164°N 132.442°E / 35.164; 132.442 | Ōda, Shimane |  | 130# | 1923 | world leading medieval silver producer | 
| Tsumo mine[100][101] | Gold | 34.65°N 131.986°E / 34.65; 131.986 | Masuda, Shimane |  | 1950x | ? |  | 
| Seikoshi mine[152][153] | Gold | 34.9°N 138.827°E / 34.9; 138.827 | Toi, Shizuoka |  | 1935 | 1983 |  | 
| Kawazu mine[154] | Gold | 34.699°N 138.922°E / 34.699; 138.922 | Shimoda, Shizuoka |  | 1915 | 1959 |  | 
| Yugashima mine[155] | Gold | 34.881°N 138.914°E / 34.881; 138.914 | Amagiyugashima, Shizuoka |  | 1939 | 1958 |  | 
| Mochikoshi mine[156] | Gold | 34.876°N 138.864°E / 34.876; 138.864 | Amagiyugashima, Shizuoka |  | 1929 | 1952 |  | 
| Sado mine[157] | Gold | 38.038°N 138.261°E / 38.038; 138.261 | Sado, Niigata |  | 1601 | 1974 |  | 
| Togi mine[158][159] | Gold | 37.144°N 136.783°E / 37.144; 136.783 | Shika, Ishikawa | Mitsubishi Metal Mining | 1906 | 1942 |  | 
| Mumaya mine[160] | Gold | 36.067°N 137.024°E / 36.067; 137.024 | Shōkawa, Gifu |  | 159# | ? |  | 
| Tsugu mine[4][5] | Gold | 35.178°N 137.629°E / 35.178; 137.629 | Shitara, Aichi |  | 15## | 1956 |  | 
| Kamaishi mine[117] | Gold | 39.3°N 141.683°E / 39.3; 141.683 | Kamaishi, Iwate |  | 1727 | 1993 | Dominant iron producer of Japan pre-war | 
| Nishizawa mine[161] | Gold | 36.869°N 139.498°E / 36.869; 139.498 | Nikkō, Tochigi |  | 1928 | ? |  | 
| Chitose mine [ja][162] | Gold | 42.725°N 141.217°E / 42.725; 141.217 | Chitose, Hokkaido |  | 1936 | 1974 |  | 
| Hokuryu mine[163] | Gold | 44.542°N 142.817°E / 44.542; 142.817 | Monbetsu, Hokkaido |  | ? | 1943 |  | 
| Konomai gold mine[164] | Gold | 44.135°N 143.349°E / 44.135; 143.349 | Monbetsu, Hokkaido |  | 1917 | 1973 |  | 
| Horobetsu mine[120] | Gold | 42.475°N 141.05°E / 42.475; 141.05 | Noboribetsu, Hokkaido |  | 1898 | 1973 |  | 
| Sanru mine [ja][165] | Gold | 44.383°N 142.642°E / 44.383; 142.642 | Shimokawa, Hokkaido |  | 1926 | 1983 |  | 
| Kitanoo mine[166] | Gold | 43.925°N 143.569°E / 43.925; 143.569 | Kitami, Hokkaido |  | 1924 | 1943 |  | 
| Teine mine [ja][167] | Gold | 43.092°N 141.203°E / 43.092; 141.203 | Sapporo, Hokkaido |  | 1941 | 1971 |  | 
| Shizukari Mine [ja][168] | Gold | 42.6°N 140.458°E / 42.6; 140.458 | Shiribeshi, Hokkaido |  | 1918 | 1962 |  | 
| Ponshikaribetsu mine[169] | Gold | 43.184°N 140.786°E / 43.184; 140.786 | Shiribeshi, Hokkaido |  | 1891 | open |  | 
| Todoroki mine[170] | Gold | 43.008°N 140.925°E / 43.008; 140.925 | Shiribeshi, Hokkaido |  | 1903 | 1974 |  | 
| Toi gold mine | Gold | 34.908°N 138.793°E / 34.908; 138.793 | Toi | Sumitomo Group | 1370 | 1965 |  | 
| Kōryū Mine [ja][171] | Gold | 42.793°N 141.286°E / 42.793; 141.286 | Eniwa, Hokkaido |  | 1935 | 1943 |  | 
| Amou mine[172] | Gold | 36.234°N 136.954°E / 36.234; 136.954 | Shirakawa, Gifu (village) |  | ? | closed | large gold deposit | 
| Sennotani mine[173] | Graphite | 36.71°N 137.167°E / 36.71; 137.167 | Toyama, Toyama |  | ? | 1967 | 85% of graphite producer of Japan in 1951 | 
| Amou mine[172] | Graphite | 36.234°N 136.954°E / 36.234; 136.954 | Shirakawa, Gifu (village) |  | ? | closed | Leading graphite producer of Japan | 
| Toyoha mine[174] | Indium | 42.98°N 141.041°E / 42.98; 141.041 | Sapporo, Hokkaido |  | ? | 2006 | World leading indium producer until exhausted | 
| Kunimiyama mine[175][176] | Iron | 33.631°N 133.419°E / 33.631; 133.419 | Kōchi, Kōchi |  | ? | closed |  | 
| Sannotake mine[13][14] | Iron | 33.7°N 130.85°E / 33.7; 130.85 | Tagawa, Fukuoka |  | ? | ? | includes Yokozuru mine | 
| Kabasawa mine[177][178] | Iron | 38.326°N 140.728°E / 38.326; 140.728 | Aoba-ku, Sendai |  | ? | ? |  | 
| Matsuo mine[179][180] | Iron | 39.933°N 140.933°E / 39.933; 140.933 | Matsuo, Iwate |  | 1914 | 1971 | important iron and sulphur producer | 
| Sennin mine[86] | Iron | 39.311°N 140.889°E / 39.311; 140.889 | Waga District, Iwate |  | 1911 | 1974 | also called Wagasennin mine | 
| Gunma-tetsuzan[10] | Iron | 36.653°N 138.597°E / 36.653; 138.597 | Nakanojō, Gunma |  | 1943 | 1975 |  | 
| Akatani mine | Iron | 37.808°N 139.492°E / 37.808; 139.492 | Shibata, Niigata |  | 1925 | 1975 |  | 
| Suwa mine[181] | Iron | 36.044°N 138.275°E / 36.044; 138.275 | Chino, Nagano |  | ? | 195# |  | 
| Akagane mine[182] | Iron | 39.167°N 141.333°E / 39.167; 141.333 | Esashi, Iwate |  | 1912 | 1974 |  | 
| Kamaishi mine[117] | Iron | 39.3°N 141.683°E / 39.3; 141.683 | Kamaishi, Iwate |  | 1727 | 1993 | Dominant iron producer of Japan pre-war | 
| Shojingawa mine[183] | Iron | 41.895°N 140.699°E / 41.895; 140.699 | Nanae, Hokkaido |  | 1897 | 1960 |  | 
| Kutchan mine[184] | Iron | 42.91°N 140.778°E / 42.91; 140.778 | Shiribeshi, Hokkaido |  | ? | ? | Dominant iron producer of Japan during Pacific War | 
| Taishu mine[185][186] | Kaolinite | 34.221°N 129.219°E / 34.221; 129.219 | Tsushima Island |  | 699 | open | initially mined for silver, later switched for kaolinite | 
| Sarayama mine[187] | Kaolinite | 32.358°N 130.033°E / 32.358; 130.033 | Amakusa |  | ? | open |  | 
| Itaya mine[188][189] | Kaolinite | 37.772°N 140.25°E / 37.772; 140.25 | Yonezawa, Yamagata |  | ? | ? | paper-clay | 
| Hiraki mine[190][191] | Kaolinite | 34.958°N 135.1°E / 34.958; 135.1 | Sanda, Hyōgo |  | ? | open | High purity, used for fiber optics | 
| Hattori-Kawai mine[192] | Kaolinite | 36.393°N 136.597°E / 36.393; 136.597 | Nomi, Ishikawa and Hakusan, Ishikawa
 |  | 1930 | open | Hattori mine in Nomi closed in 2001 | 
| Shakanai mine[193] | Lead | 40.308°N 140.578°E / 40.308; 140.578 | Ōdate, Akita | Dowa Holdings | ? | ? | also contains Germanium, Indium and Gold | 
| Kosaka mine[38] | Lead | 40.337°N 140.754°E / 40.337; 140.754 | Kosaka, Akita | Dowa Holdings | 18## | ? |  | 
| Hanaoka mine[39] | Lead | 40.309°N 140.552°E / 40.309; 140.552 | Ōdate, Akita | Kajima, Dowa mining | 1885 | ? | the site of Hanaoka Incident during WWII | 
| Mitate mine[62][63] | Lead | 32.775°N 131.472°E / 32.775; 131.472 | Hinokage, Miyazaki | Rasa Industries | 1915 | 1970 | on slopes of Mount Sobo | 
| Ohori mine[74][75] | Lead | 38.746°N 140.464°E / 38.746; 140.464 | Mogami, Yamagata |  | ? | ? |  | 
| Yatani mine[194][195] | Lead | 37.775°N 140.017°E / 37.775; 140.017 | Yonezawa, Yamagata |  | ? | ? | also some gold and silver[196] | 
| Ōizumi mine[71][72][73] | Lead | 38.413°N 139.728°E / 38.413; 139.728 | Tsuruoka, Yamagata |  | 1882 | 1950 |  | 
| Nissho mine[197][198] | Lead | 38.992°N 140.242°E / 38.992; 140.242 | Mamurogawa, Yamagata |  | 1937 | 1963 |  | 
| Hosokura mine[16][17] | Lead | 38.808°N 140.9°E / 38.808; 140.9 | Kurihara, Miyagi |  | 1898 | 1977 | now become an amusement park | 
| Hanawa 2 mine[81] | Lead | 40.176°N 140.867°E / 40.176; 140.867 | Hachimantai, Iwate |  | ? | ? | not to be confused with Hanawa manganese mine in Miyako, Iwate | 
| Taro mine[199][200][201] | Lead | 39.758°N 141.933°E / 39.758; 141.933 | Miyako, Iwate |  | 1936 | 1979 | reused for Cosmic-ray observatory of Meisei University | 
| Tsumo mine[100][101] | Lead | 34.65°N 131.986°E / 34.65; 131.986 | Masuda, Shimane |  | 195x | ? |  | 
| Wanibuchi mine[202][203] | Lead | 35.417°N 132.75°E / 35.417; 132.75 | Izumo, Shimane |  | ? | ? | also important gypsum producer | 
| Nanetsu mine[204] | Lead | 37.094°N 139.042°E / 37.094; 139.042 | Muika, Niigata |  | 1963 | 1971 |  | 
| Asahi-budo mine[205] | Lead | 38.4°N 139.561°E / 38.4; 139.561 | Murakami, Niigata |  | 1941 | 1957 |  | 
| Otani mine[206] | Lead | 37.75°N 139.413°E / 37.75; 139.413 | Mikawa, Niigata |  | 1632 | 1961 |  | 
| Hatasa mine[113] | Lead | 35.852°N 137.063°E / 35.852; 137.063 | Gujō, Gifu |  | 1674 | 1916 |  | 
| Ohinata mine[207] | Lead | 36.167°N 138.483°E / 36.167; 138.483 | Sakuho, Nagano |  | ? | ? | Closed | 
| Nakatatsu mine[115] | Lead | 35.873°N 136.578°E / 35.873; 136.578 | Ōno, Fukui |  | ? | ? | Closed | 
| Toyoha mine[174] | Lead | 42.98°N 141.041°E / 42.98; 141.041 | Sapporo, Hokkaido |  | ? | 2006 | World leading indium producer until exhausted | 
| Obira mine[6] | Lead | 32.842°N 131.578°E / 32.842; 131.578 | mount Sobo in Nishiusuki, Miyazaki |  | 1617 | 1954 |  | 
| Inaushi mine[15] | Lead | 43.242°N 143.722°E / 43.242; 143.722 | Kitami, Hokkaido |  | 1934 | 1964 |  | 
| Yoichi Mine[208] | Lead | 43.217°N 140.7°E / 43.217; 140.7 | Shakotan Peninsula, Hokkaido |  | ? | 1963 |  | 
| Suttsu mine[122] | Lead | 42.772°N 140.293°E / 42.772; 140.293 | Suttsu District, Hokkaido |  | ? | 1962 |  | 
| Nagatare mine[209][210] | Lithium | 33.583°N 130.283°E / 33.583; 130.283 | Fukuoka, Fukuoka |  | ? | ? |  | 
| Ananai mine[211] | Manganese | 33.692°N 133.647°E / 33.692; 133.647 | Nankoku, Kōchi |  | ? | closed |  | 
| Kunimiyama mine[175][176] | Manganese | 33.631°N 133.419°E / 33.631; 133.419 | Kōchi, Kōchi |  | ? | closed |  | 
| Kurase mine[212] | Manganese | 33.8°N 133.033°E / 33.8; 133.033 | Saijō, Ehime |  | ? | ? |  | 
| Ōizumi mine[71][72][73] | Manganese | 38.413°N 139.728°E / 38.413; 139.728 | Tsuruoka, Yamagata |  | 1882 | 1950 |  | 
| Tanohata mine[213] | Manganese | 39.917°N 141.9°E / 39.917; 141.9 | Tanohata, Iwate |  | ? | ? | a type location for a number of rare minerals | 
| Hanawa mine[214] | Manganese | 39.641°N 141.957°E / 39.641; 141.957 | Miyako, Iwate |  | ? | ? | closed | 
| Noda-Tamagawa mine[215][216] | Manganese | 40.073°N 141.808°E / 40.073; 141.808 | Noda, Iwate |  | 1950 | ? |  | 
| Shiromaru mine[217] | Manganese | 35.808°N 139.125°E / 35.808; 139.125 | Okutama, Tokyo |  | ? | ? | now submerged, also called Hakumaru mine | 
| Kaso mine[218][219] | Manganese | 36.604°N 139.633°E / 36.604; 139.633 | Kanuma, Tochigi |  | 1947 | ? |  | 
| Ōkura mine[220] | Manganese | 36.856°N 139.328°E / 36.856; 139.328 | Hannō, Saitama |  | 1941 | 1945 |  | 
| Shōwa mine[221] | Manganese | 36.551°N 139.308°E / 36.551; 139.308 | Kiryū, Gunma |  | ? | ? | closed | 
| Hamayokogawa mine[222] | Manganese | 35.973°N 137.9°E / 35.973; 137.9 | Kamiina District, Nagano |  | 1925 | 1966 | large deposits | 
| Searashi mine[223] | Manganese | 37.116°N 136.88°E / 37.116; 136.88 | Nanao, Ishikawa |  | ? | ? |  | 
| Fujii mine[224] | Manganese | 35.533°N 135.85°E / 35.533; 135.85 | Wakasa, Fukui |  | ? | ? |  | 
| Taguchi mine[225] | Manganese | 35.119°N 137.546°E / 35.119; 137.546 | Shitara, Aichi |  | ? | ? | also Pyroxmangite gems | 
| Obira mine[6] | Manganese | 32.842°N 131.578°E / 32.842; 131.578 | mount Sobo in Nishiusuki, Miyazaki |  | 1617 | 1954 |  | 
| Jokoku mine[226] | Manganese | 41.667°N 140.053°E / 41.667; 140.053 | Kaminokuni, Hokkaido |  | ? | ? | Dominant manganese producer of Japan | 
| Inakuraishi mine[227] | Manganese | 43.15°N 140.633°E / 43.15; 140.633 | Furubira, Hokkaido |  | 1946 | open | Largest manganese deposit in Japan | 
| Ryūshōden mine [ja] | Mercury | 44.312°N 143.321°E / 44.312; 143.321 | Monbetsu, Hokkaido |  | 1943 | 1974 |  | 
| Tosakubo mine[228] | Mercury | 33.8°N 133.95°E / 33.8; 133.95 | Monobe, Kōchi |  | ? | ? |  | 
| Ikadazu mine[52] | Mercury | 33.832°N 133.383°E / 33.832; 133.383 | Niihama, Ehime |  | ? | 1973 |  | 
| Itomuka mine[229] | Mercury | 43.683°N 143.167°E / 43.683; 143.167 | Tokoro, Hokkaido |  | 1941 | 1974 | dominant mercury producer of Japan | 
| Seikyu Mine[230] | Molybdenum | 35.288°N 132.989°E / 35.288; 132.989 | Daitō, Shimane |  | 1954 | 1966 |  | 
| Daito Mine[231] | Molybdenum | 35.296°N 132.978°E / 35.296; 132.978 | Daitō, Shimane |  | 1950 | 1966 |  | 
| Hirase Mine[232] | Molybdenum | 36.171°N 136.917°E / 36.171; 136.917 | Shirakawa, Gifu |  | 1931 | 1979 |  | 
| Komaki Mine[233] | Molybdenum | 35.086°N 132.997°E / 35.086; 132.997 | Okuizumo, Shimane |  | 1943 | 1984 |  | 
| Ōkawame mine[234] | Molybdenum | 40.19°N 141.776°E / 40.19; 141.776 | Kuji, Iwate |  | 1943 | 1965 |  | 
| Chiyogahara mine[31] | Nickel | 38.867°N 141.35°E / 38.867; 141.35 | Fujisawa, Iwate |  | ? | ? |  | 
| Kamogawa mine[235][236] | Nickel | 35.117°N 139.833°E / 35.117; 139.833 | Awa District, Chiba |  | 1935 | ? | also called Kameoka mine | 
| Tenryū mine[34][35] | Nickel | 35.283°N 137.85°E / 35.283; 137.85 | Tenryū, Nagano |  | ? | open |  | 
| Wakasa mine[237] | Nickel | 35.483°N 135.617°E / 35.483; 135.617 | Ōi, Fukui | Mori Kogyo | ? | Open | also silica mining | 
| Yamanoyoshida mine[238] | Nickel | 34.833°N 137.5°E / 34.833; 137.5 | Shinshiro, Aichi |  | ? | ? |  | 
| Kamikawa mine[239] | Nickel | 43.848°N 142.77°E / 43.848; 142.77 | Kamikawa, Hokkaido |  | 1941 | 1945 |  | 
| Otanibira quarry[240][241] | Silica | 30.791°N 130.305°E / 30.791; 130.305 | Iōjima (Kagoshima) |  | ? | 1997 | initially mined for sulphur | 
| Motoyasu mine[46] | Silver | 33.796°N 133.253°E / 33.796; 133.253 | Saijō, Ehime |  | 1877 | 1972 |  | 
| Taio mine[123][124] | Silver | 33.139°N 130.894°E / 33.139; 130.894 | Hita, Ōita |  | 1896 | 1972 | now museum | 
| Bajo mine[125] | Silver | 33.481°N 131.517°E / 33.481; 131.517 | Bungotakada, Ōita |  | ? | ? |  | 
| Taishu mine[185][186] | Silver | 34.221°N 129.219°E / 34.221; 129.219 | Tsushima Island |  | 699 | open | initially mined for silver, later switched for kaolinite | 
| Iwato mine[67][68] | Silver | 31.277°N 130.326°E / 31.277; 130.326 | Makurazaki, Kagoshima |  | ? | ? |  | 
| Kushikino mine[131][132] | Silver | 31.754°N 130.3°E / 31.754; 130.3 | Kushikino, Kagoshima | Mitsui mining | 195# | closed |  | 
| Yamagano mine[133][134] | Silver | 31.919°N 130.617°E / 31.919; 130.617 | Kirishima, Kagoshima |  | 1642 | 1965 |  | 
| Fuke mine[138][139][242] | Silver | 32.15°N 130.617°E / 32.15; 130.617 | Isa, Kagoshima | Toa mining | 1937 | 1976 | also nearby Okuchi mine | 
| Yoshino mine[141][142][143][144] | Silver | 38.153°N 140.197°E / 38.153; 140.197 | Nan'yō, Yamagata |  | ? | 1975 |  | 
| Oya mine[145] | Silver | 38.867°N 141.522°E / 38.867; 141.522 | Motoyoshi, Miyagi |  | 1915 | 1971 |  | 
| Hosokura mine[16][17] | Silver | 38.808°N 140.9°E / 38.808; 140.9 | Kurihara, Miyagi |  | 1898 | 1977 | now become an amusement park | 
| Nebazawa mine[150][151] | Silver | 36.871°N 139.322°E / 36.871; 139.322 | Katashina, Gunma |  | 1961 | 1982 |  | 
| Tsunatori mine[85] | Silver | 39.304°N 140.942°E / 39.304; 140.942 | Waga District, Iwate |  | 1908 | 1962 |  | 
| Ōmidani mine[147] | Silver | 35.246°N 134.647°E / 35.246; 134.647 | Shisō, Hyōgo |  | 1961 | 1983 |  | 
| Takeno mine[148] | Silver | 35.611°N 134.736°E / 35.611; 134.736 | Kinosaki, Hyōgo |  | ? | ? |  | 
| Tada mine[93] | Silver | 34.893°N 135.358°E / 34.893; 135.358 | Inagawa, Hyōgo | Nihon Kogyo | 1211 | 1973 |  | 
| Asahi mine[149] | Silver | 34.902°N 134.314°E / 34.902; 134.314 | Asago, Hyōgo |  | 1921 | 1985 |  | 
| Tochigi mine[94] | Silver | 36.794°N 139.814°E / 36.794; 139.814 | Shioya, Tochigi |  | 1946 | 1965 |  | 
| Iwami Ginzan Silver Mine[98][99] | Silver | 35.164°N 132.442°E / 35.164; 132.442 | Ōda, Shimane |  | 130# | 1923 | world leading medieval silver producer | 
| Seikoshi mine[152][153] | Silver | 34.9°N 138.827°E / 34.9; 138.827 | Toi, Shizuoka |  | 1935 | 1983 |  | 
| Yugashima mine[155] | Silver | 34.881°N 138.914°E / 34.881; 138.914 | Amagiyugashima, Shizuoka |  | 1939 | 1958 |  | 
| Mochikoshi mine[156] | Silver | 34.876°N 138.864°E / 34.876; 138.864 | Amagiyugashima, Shizuoka |  | 1929 | 1952 |  | 
| Sado mine[157] | Silver | 38.038°N 138.261°E / 38.038; 138.261 | Sado, Niigata |  | 1601 | 1974 |  | 
| Togi mine[158][159] | Silver | 37.144°N 136.783°E / 37.144; 136.783 | Shika, Ishikawa | Mitsubishi Metal Mining | 1906 | 1942 |  | 
| Hatasa mine[113] | Silver | 35.852°N 137.063°E / 35.852; 137.063 | Gujō, Gifu |  | 1674 | 1916 |  | 
| Kamaishi mine[117] | Silver | 39.3°N 141.683°E / 39.3; 141.683 | Kamaishi, Iwate |  | 1727 | 1993 | Dominant iron producer of Japan pre-war | 
| Toyoha mine[174] | Silver | 42.98°N 141.041°E / 42.98; 141.041 | Sapporo, Hokkaido |  | ? | 2006 | World leading indium producer until exhausted | 
| Nishizawa mine[161] | Silver | 36.869°N 139.498°E / 36.869; 139.498 | Nikkō, Tochigi |  | 1928 | ? |  | 
| Ikuno mine[243] | Silver | 35.167°N 134.825°E / 35.167; 134.825 | Asago, Hyōgo |  | 807 | 1973 |  | 
| Chitose mine [ja][162] | Silver | 42.725°N 141.217°E / 42.725; 141.217 | Chitose, Hokkaido |  | 1936 | 1974 |  | 
| Hokuryu mine[163] | Silver | 44.542°N 142.817°E / 44.542; 142.817 | Monbetsu, Hokkaido |  | ? | 1943 |  | 
| Konomai mines[164] | Silver | 44.135°N 143.349°E / 44.135; 143.349 | Monbetsu, Hokkaido |  | 1917 | 1973 | important silver producer of Japan | 
| Horobetsu mine[120] | Silver | 42.475°N 141.05°E / 42.475; 141.05 | Noboribetsu, Hokkaido |  | 1898 | 1973 |  | 
| Sanru mine [ja][165] | Silver | 44.383°N 142.642°E / 44.383; 142.642 | Shimokawa, Hokkaido |  | 1926 | 1983 |  | 
| Kitanoo mine[166] | Silver | 43.925°N 143.569°E / 43.925; 143.569 | Kitami, Hokkaido |  | 1924 | 1943 |  | 
| Shizukari Mine [ja][168] | Silver | 42.6°N 140.458°E / 42.6; 140.458 | Shiribeshi, Hokkaido |  | 1918 | 1962 |  | 
| Suttsu mine[122] | Silver | 42.772°N 140.293°E / 42.772; 140.293 | Suttsu District, Hokkaido |  | ? | 1962 |  | 
| Kōryū Mine [ja][171] | Silver | 42.793°N 141.286°E / 42.793; 141.286 | Eniwa, Hokkaido |  | 1935 | 1943 |  | 
| Nonowaki mine[41][42] | Sulphur | 33.9°N 134.247°E / 33.9; 134.247 | Naka, Tokushima |  | ? | 196# |  | 
| Shirataki mine[26][27][28] | Sulphur | 33.828°N 133.472°E / 33.828; 133.472 | Ōkawa, Kōchi | Nippon Mining Co | ? | ? |  | 
| Shingu mine[44][45] | Sulphur | 33.933°N 133.633°E / 33.933; 133.633 | Shikokuchūō, Ehime |  | 1911 | 1975 | also diamond-bearing Lherzolite | 
| Ōkuki mine[47][48] | Sulphur | 33.514°N 132.656°E / 33.514; 132.656 | Uchiko, Ehime |  | ? | ? |  | 
| Suzuyama mine[244][245] | Sulphur | 31.49°N 130.45°E / 31.49; 130.45 | Kagoshima, Kagoshima |  | 184x | closed | water treatment plant still active | 
| Taro mine[199][200][201] | Sulphur | 39.758°N 141.933°E / 39.758; 141.933 | Miyako, Iwate |  | 1936 | 1979 | reused for Cosmic-ray observatory of Meisei University | 
| Matsuo mine[179][180] | Sulphur | 39.933°N 140.933°E / 39.933; 140.933 | Matsuo, Iwate |  | 1914 | 1971 | important iron and sulphur producer | 
| Yanahara mine[107][108] | Sulphur | 34.958°N 134.069°E / 34.958; 134.069 | Misaki, Okayama |  | 195# | 1970 | also produced iron oxide for audio tapes | 
| Horobetsu sulphur mine[246] | Sulphur | 42.565°N 140.976°E / 42.565; 140.976 | Sōbetsu, Hokkaido |  | 1940 | 1959 |  | 
| Kobui mine[247] | Sulphur | 41.767°N 140.733°E / 41.767; 140.733 | Hakodate, Hokkaido |  | 1904 | 1952 |  | 
| Shojingawa mine[183] | Sulphur | 41.895°N 140.699°E / 41.895; 140.699 | Nanae, Hokkaido |  | 1938 | 1960 |  | 
| Shiretoko mine[248] | Sulphur | 44.133°N 145.161°E / 44.133; 145.161 | Shiretoko Peninsula, Hokkaido |  | 1937 | ? | deposit created in volcanic eruption of 1936 | 
| Akan mine[249] | Sulphur | 43.452°N 144.099°E / 43.452; 144.099 | Ashoro, Hokkaido |  | 1951 | open |  | 
| Kiura mine[250] | Tin | 32.8°N 131.55°E / 32.8; 131.55 | Saiki, Ōita |  | 16## | ? | also mined for emery | 
| Obira mine[6] | Tin | 32.842°N 131.578°E / 32.842; 131.578 | Bungo-ōno, Oita |  | ? | ? | also contains boron and fluorine minerals | 
| Hoei mine[251][252] | Tin | 32.859°N 131.453°E / 32.859; 131.453 | Bungo-ōno, Oita |  | ? | closed |  | 
| Yakushima mine[126] | Tin | 30.359°N 130.529°E / 30.359; 130.529 | Yakushima |  | ? | 1958 | leading tungsten producer | 
| Mitate mine[62][63] | Tin | 32.775°N 131.472°E / 32.775; 131.472 | Hinokage, Miyazaki | Rasa Industries | 1915 | 1970 | on slopes of Mount Sobo | 
| Suzuyama mine[244][245] | Tin | 31.49°N 130.45°E / 31.49; 130.45 | Kagoshima, Kagoshima |  | 184x | closed | water treatment plant still active | 
| Tada mine[93] | Tin | 34.893°N 135.358°E / 34.893; 135.358 | Inagawa, Hyōgo | Nihon Kogyo | 1211 | 1973 |  | 
| Akenobe mine[9] | Tin | 35.283°N 134.667°E / 35.283; 134.667 | Yabu, Hyōgo |  | 1908 | 1987 | dominant tin producer of Japan | 
| Obira mine[6] | Tin | 32.842°N 131.578°E / 32.842; 131.578 | mount Sobo in Nishiusuki, Miyazaki |  | 1617 | 1954 |  | 
| Kabasawa mine[177][178] | Titanium | 38.326°N 140.728°E / 38.326; 140.728 | Aoba-ku, Sendai |  | ? | ? |  | 
| Yakushima mine[126] | Tungsten | 30.359°N 130.529°E / 30.359; 130.529 | Yakushima |  | ? | 1958 | leading tungsten producer | 
| Takatori mine[253] | Tungsten | 36.5°N 140.294°E / 36.5; 140.294 | Shirosato, Ibaraki |  | ? | ? | also Rhodochrosite gems | 
| Kuga mine[254] | Tungsten | 34.217°N 132.025°E / 34.217; 132.025 | Iwakuni, Yamaguchi |  | ? | ? |  | 
| Fujigatani mine[97] | Tungsten | 34.144°N 132.017°E / 34.144; 132.017 | Iwakuni, Yamaguchi |  | 1955 | 1977 | closed | 
| Tsumo mine[100][101] | Tungsten | 34.65°N 131.986°E / 34.65; 131.986 | Masuda, Shimane |  | 195x | ? |  | 
| Fukuoka mine[12] | Tungsten | 35.586°N 137.468°E / 35.586; 137.468 | Nakatsugawa, Gifu | Furukawa | ? | ? | Closed | 
| Komaki Mine[233] | Tungsten | 35.086°N 132.997°E / 35.086; 132.997 | Okuizumo, Shimane |  | 1911 | 1984 |  | 
| Akenobe mine[9] | Tungsten | 35.283°N 134.667°E / 35.283; 134.667 | Yabu, Hyōgo |  | 1908 | 1987 |  | 
| Otani mine[255] | Tungsten | 35.033°N 135.517°E / 35.033; 135.517 | Kameoka, Kyoto |  | 1912 | 1983 |  | 
| Yaguki mine[119] | Tungsten | 37.171°N 140.915°E / 37.171; 140.915 | Iwaki, Fukushima |  | 1945 | 1974 |  | 
| Ningyo-toge mine[256][257] | Uranium | 35.308°N 133.933°E / 35.308; 133.933 | Kagamino, Okayama |  | 1969 | 1982 | dominant uranium producer of Japan | 
| Tono mine[258] | Uranium | 35.408°N 137.233°E / 35.408; 137.233 | Mizunami, Gifu |  | 2001 | open |  | 
| Kosaka mine[38] | Zinc | 40.337°N 140.754°E / 40.337; 140.754 | Kosaka, Akita | Dowa Holdings | 18## | ? |  | 
| Shakanai mine[193] | Zinc | 40.308°N 140.578°E / 40.308; 140.578 | Ōdate, Akita | Dowa Holdings | ? | ? | also contains Germanium, Indium and Gold | 
| Hanaoka mine[39] | Zinc | 40.309°N 140.552°E / 40.309; 140.552 | Ōdate, Akita | Kajima, Dowa mining | 1885 | ? | the site of Hanaoka Incident during WWII | 
| Obira mine[6] | Zinc | 32.842°N 131.578°E / 32.842; 131.578 | Bungo-ōno, Oita |  | ? | ? | also contains boron and fluorine minerals | 
| Mitate mine[62][63] | Zinc | 32.775°N 131.472°E / 32.775; 131.472 | Hinokage, Miyazaki | Rasa Industries | 1915 | 1970 | on slopes of Mount Sobo | 
| Ohori mine[74][75] | Zinc | 38.746°N 140.464°E / 38.746; 140.464 | Mogami, Yamagata |  | ? | ? |  | 
| Yatani mine[194][195] | Zinc | 37.775°N 140.017°E / 37.775; 140.017 | Yonezawa, Yamagata |  | ? | ? | also some gold and silver[196] | 
| Yoshino mine[141][142][143][144] | Zinc | 38.153°N 140.197°E / 38.153; 140.197 | Nan'yō, Yamagata |  | ? | 1975 |  | 
| Ōizumi mine[71][72][73] | Zinc | 38.413°N 139.728°E / 38.413; 139.728 | Tsuruoka, Yamagata |  | 1882 | 1950 |  | 
| Nissho mine[197][198] | Zinc | 38.992°N 140.242°E / 38.992; 140.242 | Mamurogawa, Yamagata |  | 1937 | 1963 |  | 
| Yaso mine[91] | Zinc | 37.058°N 139.658°E / 37.058; 139.658 | Minamiaizu, Fukushima |  | 1952 | 1970 |  | 
| Hosokura mine[16][17] | Zinc | 38.808°N 140.9°E / 38.808; 140.9 | Kurihara, Miyagi |  | 1898 | 1977 | now become an amusement park | 
| Hanawa 2 mine[81] | Zinc | 40.176°N 140.867°E / 40.176; 140.867 | Hachimantai, Iwate |  | ? | ? | not to be confused with Hanawa manganese mine in Miyako, Iwate | 
| Taro mine[199][200][201] | Zinc | 39.758°N 141.933°E / 39.758; 141.933 | Miyako, Iwate |  | 1936 | 1979 | reused for Cosmic-ray observatory of Meisei University | 
| Kidogasawa mine[95] | Zinc | 36.797°N 139.7°E / 36.797; 139.7 | Nikkō, Tochigi |  | 1940 | 1974 |  | 
| Tsumo mine[100][101] | Zinc | 34.65°N 131.986°E / 34.65; 131.986 | Masuda, Shimane |  | 195x | ? |  | 
| Wanibuchi mine[202][203] | Zinc | 35.417°N 132.75°E / 35.417; 132.75 | Izumo, Shimane |  | ? | ? | also important gypsum producer | 
| Takara mine[109][110] | Zinc | 35.575°N 138.85°E / 35.575; 138.85 | Tsuru, Yamanashi |  | 1942 | 1962 | also produced pyrite | 
| Nanetsu mine[204] | Zinc | 37.094°N 139.042°E / 37.094; 139.042 | Muika, Niigata |  | 1963 | 1971 |  | 
| Asahi-budo mine[205] | Zinc | 38.4°N 139.561°E / 38.4; 139.561 | Murakami, Niigata |  | 1941 | 1957 |  | 
| Otani mine[206] | Zinc | 37.75°N 139.413°E / 37.75; 139.413 | Mikawa, Niigata |  | 1632 | 1961 |  | 
| Ohinata mine[207] | Zinc | 36.167°N 138.483°E / 36.167; 138.483 | Sakuho, Nagano |  | ? | ? | Closed | 
| Kamioka mine[259] | Zinc | 36.34°N 137.33°E / 36.34; 137.33 | Hida, Gifu |  | ? | 2002 | Used to be leading Asian zinc mine until re-used for Super-Kamiokande neutrino observatory. | 
| Hatasa mine[113] | Zinc | 35.852°N 137.063°E / 35.852; 137.063 | Gujō, Gifu |  | 1674 | 1916 |  | 
| Nakatatsu mine[115] | Zinc | 35.873°N 136.578°E / 35.873; 136.578 | Ōno, Fukui |  | ? | ? | Closed | 
| Toyoha mine[174] | Zinc | 42.98°N 141.041°E / 42.98; 141.041 | Sapporo, Hokkaido |  | ? | 2006 | World leading indium producer until exhausted | 
| Inaushi mine[15] | Zinc | 43.242°N 143.722°E / 43.242; 143.722 | Kitami, Hokkaido |  | 1934 | 1964 |  | 
| Yoichi Mine[208] | Zinc | 43.217°N 140.7°E / 43.217; 140.7 | Shakotan Peninsula, Hokkaido |  | ? | 1963 |  | 
| Suttsu mine[122] | Zinc | 42.772°N 140.293°E / 42.772; 140.293 | Suttsu District, Hokkaido |  | ? | 1962 |  | 
| Akenobe mine[9] | Zinc | 35.283°N 134.667°E / 35.283; 134.667 | Yabu, Hyōgo |  | 1908 | 1987 |  | 
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