List of cis-regulatory RNA elements

This is a list of cis-regulatory RNAs. These are RNA motifs which regulate nucleic acid regions on the same molecule, as opposed to trans-acting motifs which regulate a distal molecule. Some of these RNAs are broadly distributed while others are single RNA families.

#

• 23S methyl RNA motif
• 6C RNA

A

• Actino-pnp RNA motif
• AdoCbl riboswitch
• Alfalfa mosaic virus coat protein binding (CPB) RNA
• Alfalfa mosaic virus RNA 1 5′ UTR stem-loop
• Alpha operon ribosome binding site
• Antizyme RNA frameshifting stimulation element
• APC internal ribosome entry site (IRES)
• Aphthovirus internal ribosome entry site (IRES)
• Apolipoprotein B (apoB) 5′ UTR cis-regulatory element
• aspS RNA motif
• AtoC RNA motif
• atpB RNA motif
• ATPC RNA motif
• AU-rich element

B

• Bacteroid-trp RNA motif
• Bag-1 internal ribosome entry site (IRES)
• Bamboo mosaic potexvirus (BaMV) cis-regulatory element
• Bamboo mosaic virus satellite RNA cis-regulatory element
• Bovine leukaemia virus RNA packaging signal
• Burkholderiales-2 RNA motif

C

• Chlorobi-RRM RNA motif
• chrB RNA motif
• Citrus tristeza virus replication signal
• CrcB RNA motif
• Ctgf/hcs24 CAESAR
• COG3860 RNA motif
• Cap-independent translation element

D

• DABA-DC-AT RNA motif
• DUF1874 RNA motif
• DUF3085 RNA motif
• DUF3577 RNA motif

E

• EngA RNA motif
• Enterobacteria greA leader
• Enterobacteria rnk leader
• Enteroviral 3′ UTR element
• Enterovirus 5′ cloverleaf cis-acting replication element
• Enterovirus cis-acting replication element

F

• Fibro-purF RNA motif
• FIE3 (ftz instability element 3′) element
• Flavivirus capsid hairpin cHP
• Flg-Rhizobiales RNA motif
• FlpD RNA motif
• folE RNA motif
• folP RNA motif
• Freshwater-2 RNA motif
• FTHFS RNA motif
• Fusobacteriales-1 RNA motif

G

• G-CSF factor stem-loop destabilising element
• Gammaproteobacteria rimP leader
• gltS RNA motif
• GP20 RNA motif

H

• Heat shock protein 70 (Hsp70) internal ribosome entry site (IRES)
• Hepatitis C alternative reading frame stem-loop
• Hepatitis C stem-loop IV
• Hepatitis C virus (HCV) cis-acting replication element (CRE)
• Hepatitis C virus 3'X element
• Hepatitis C virus stem-loop VII
• Hepatitis E virus cis-reactive element
• HIV gag stem loop 3 (GSL3)
• HopC RNA motif
• Human parechovirus 1 (HPeV1) cis regulatory element (CRE)
• Human rhinovirus internal cis-acting regulatory element (CRE)
• hya RNA motif

I

• IbpB thermometer
• ilvB-OMG RNA motif
• ilvH RNA motif
• Infectious bronchitis virus D-RNA
• ivy-DE RNA motif

J

• JUMPstart RNA motif

L

• L17DE RNA motif
• ldcC RNA motif
• LivK RNA motif
• Lnt RNA motif
• Luteovirus cap-independent translation element (BTE)
• lysM RNA motifs

M

• Magnesium responsive RNA element
• malK RNA motifs
• Mason-Pfizer monkey virus packaging signal
• Mnt IRES
• MraW RNA motif
• MsiK RNA motif

N

• N-myc IRES
• Nanos 3′ UTR translation control element
• narK RNA motif
• nhaA-II RNA motif
• NLPC-P60 RNA motif
• NuoG RNA motif

P

• P27 cis-regulatory element
• pemK RNA motif
• Peptidase-S11 RNA motif
• PGK RNA motif
• Potassium channel RNA editing signal
• Potato virus X cis-acting regulatory element
• PotC RNA motif
• Poxvirus AX element late mRNA cis-regulatory element
• Prion pseudoknot
• PsbNH RNA motif
• Pseudomon-groES RNA motif
• Pseudomonas rnk leader
• Pseudomonas rpsL leader
• PyrG leader
• PyrR binding site

R

• R2 RNA element
• RbcL 5′ UTR RNA stabilising element
• Red clover necrotic mosaic virus translation enhancer elements
• Regulatory region of repZ gene
• Retrovirus direct repeat 1 (dr1)
• Ribosomal protein L10 leader
• Ribosomal protein L13 leader
• Ribosomal protein L19 leader
• Ribosomal protein L20 leader
• Ribosomal protein L21 leader
• Ribosomal S15 leader
• RNase E 5′ UTR element
• RncO
• Rne-II RNA motif
• Rotavirus cis-acting replication element (CRE)
• Rothia-sucC RNA motif
• Rous sarcoma virus (RSV) primer binding site (PBS)
• RtT RNA
• Rubella virus 3′ cis-acting element

S

• S-element
• SerC leader
• Simian virus 40 late polyadenylation signal (SVLPA)
• SpeF leader
• Spi-1 (PU.1) 5′ UTR regulatory element
• ssnA RNA motif
• Sxy 5′ UTR element

T

• T-box leader
• terC RNA motif
• Termite-leu RNA motif
• Thermales-rpoB RNA motif
• Togavirus 5′ plus strand cis-regulatory element
• Tombusvirus 3′ UTR region IV
• Tombusvirus 5′ UTR
• Tombusvirus internal replication element (IRE)
• Tobamovirus IRES
• Transfer RNA-like structures
• TrkB IRES
• Turnip crinkle virus (TCV) core promoter hairpin (Pr)
• Turnip crinkle virus (TCV) repressor of minus strand synthesis H5

U

• U1A polyadenylation inhibition element (PIE)
• UnaL2 LINE 3′ element

V

• Vimentin 3′ UTR protein-binding region
• Voltage-gated potassium-channel Kv1.4 IRES

W

• Wingless localisation element 3 (WLE3)

X

• xerDC RNA motif

Y

• YbhL leader
• YdaO/yuaA leader
• YkkC-yxkD leader
• YybP-ykoY leader

See also

• List of RNAs